> Vimentin (Vim)
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UGID:573426     UniGene Mm.268000     Mus musculus (mouse)   Vim Order cDNA clone, Links
Vimentin (Vim)

Mouse protein-coding gene Vim. Represented by 1805 ESTs from 282 cDNA libraries. Corresponds to reference sequence NM_011701.4. [UniGene 573426 - Mm.268000]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_035831.2 Vim gene product M. musculus 100.0 465
NP_112402.1 Vim gene product R. norvegicus 100.0 465
NP_003371.2 VIM gene product H. sapiens 98.9 465
NP_001080908.1 vimentin-1/2 X. laevis 86.5 457
NP_571947.1 vim gene product D. rerio 80.0 454
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_002717466.1 PREDICTED: vimentin O. cuniculus 99.4 465
XP_856478.1 PREDICTED: vimentin isoform 12 C. lupus familiaris 99.1 465

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; bone marrow; uncharacterized tissue; mammary gland; muscle; bone; skin; eye; mixed; lung; brain; heart; joint; dorsal root ganglion; thymus; connective tissue; spleen; blood; adipose tissue; spinal cord; intestine; bladder; epididymis; fertilized ovum; tongue; sympathetic ganglion; pancreas; nasopharynx; kidney; liver; testis; adrenal gland; extraembryonic tissue; pineal gland; artery; uterus; salivary gland; ovary; inner ear; prostate; vagina; stomach; thyroid; lymph node; pituitary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 A2|2 10.04 cM
UniSTS entry: Chr 2 Vim
UniSTS entry: Chr 2 VIM
UniSTS entry: Vim
UniSTS entry: Vim
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (60)

AK076001.1 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610021E04 product:vimentin, full insert sequence P
AK218318.1 Mus musculus cDNA, clone:Y2G0144M12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK218080.1 Mus musculus cDNA, clone:Y2G0143O22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK217953.1 Mus musculus cDNA, clone:Y2G0143I16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK217097.1 Mus musculus cDNA, clone:Y2G0140K06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK216501.1 Mus musculus cDNA, clone:Y2G0138J08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK213831.1 Mus musculus cDNA, clone:Y2G0129K12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK213561.1 Mus musculus cDNA, clone:Y2G0128L08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK212907.1 Mus musculus cDNA, clone:Y2G0126I03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK212686.1 Mus musculus cDNA, clone:Y2G0125M11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK212338.1 Mus musculus cDNA, clone:Y2G0124J22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK212337.1 Mus musculus cDNA, clone:Y2G0124J21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK212234.1 Mus musculus cDNA, clone:Y2G0124E16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK210884.1 Mus musculus cDNA, clone:Y2G0119P10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK210390.1 Mus musculus cDNA, clone:Y2G0118E02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK209779.1 Mus musculus cDNA, clone:Y2G0116D11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK209588.1 Mus musculus cDNA, clone:Y2G0115J08, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK209459.1 Mus musculus cDNA, clone:Y2G0115D03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK209386.1 Mus musculus cDNA, clone:Y2G0114P06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK208074.1 Mus musculus cDNA, clone:Y2G0110A12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK208041.1 Mus musculus cDNA, clone:Y2G0109O16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK207271.1 Mus musculus cDNA, clone:Y2G0107H18, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK205443.1 Mus musculus cDNA, clone:Y2G0101L05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK204959.1 Mus musculus cDNA, clone:Y1G0150D04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK204707.1 Mus musculus cDNA, clone:Y1G0149F24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK203908.1 Mus musculus cDNA, clone:Y1G0146K04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK203726.1 Mus musculus cDNA, clone:Y1G0145P03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK203121.1 Mus musculus cDNA, clone:Y1G0143N15, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK198215.1 Mus musculus cDNA, clone:Y1G0127H07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK197870.1 Mus musculus cDNA, clone:Y1G0126G16, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK197845.1 Mus musculus cDNA, clone:Y1G0126F12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000051144, based on BLAT search
AK197314.1 Mus musculus cDNA, clone:Y1G0124L10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK196009.1 Mus musculus cDNA, clone:Y1G0120G10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK193713.1 Mus musculus cDNA, clone:Y1G0113C11, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK193497.1 Mus musculus cDNA, clone:Y1G0112H23, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK193158.1 Mus musculus cDNA, clone:Y1G0111E05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK190963.1 Mus musculus cDNA, clone:Y1G0104G02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK188554.1 Mus musculus cDNA, clone:Y0G0145K07, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK188217.1 Mus musculus cDNA, clone:Y0G0144H04, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK186330.1 Mus musculus cDNA, clone:Y0G0136P19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK184023.1 Mus musculus cDNA, clone:Y0G0128E19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK183844.1 Mus musculus cDNA, clone:Y0G0127H21, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search P
AK181650.1 Mus musculus cDNA, clone:Y0G0118O18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
AK179855.1 Mus musculus cDNA, clone:Y0G0111O15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028062, based on BLAT search
BC089335.1 Mus musculus vimentin, mRNA (cDNA clone MGC:102095 IMAGE:6415629), complete cds PA
AK133726.1 Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430439O09 product:vimentin, full insert sequence P
AK153019.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830119C09 product:vimentin, full insert sequence P
AK170429.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630103E23 product:vimentin, full insert sequence P
AK150270.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830001B16 product:vimentin, full insert sequence P
AK131618.1 Mus musculus adult male lung cDNA, RIKEN full-length enriched library, clone:1200014D23 product:vimentin, full insert sequence P
AK159539.1 Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420023H06 product:vimentin, full insert sequence P
AK151196.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830026K23 product:vimentin, full insert sequence P
AK169181.1 Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920087O13 product:vimentin, full insert sequence P
BC134386.1 Mus musculus vimentin, mRNA (cDNA clone IMAGE:40135453), partial cds P
M24849.1 Mouse vimentin mRNA, complete cds P
M26251.1 Mouse mRNA encoding vimentin, complete cds P
X51438.1 Mouse mRNA for vimentin P
X56397.1 Mouse mRNA for vimentin P
NM_011701.4 Mus musculus vimentin (Vim), mRNA PA
AK012469.1 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700062L12 product:vimentin, full insert sequence P

EST sequences (10 of 1805) [Show all sequences]

CA563215.1 Clone NIA:K0311D02_IMAGE:30055333 bone 5' read P
CA563456.1 Clone NIA:K0314B05_IMAGE:30055600 bone 5' read P
CA563972.1 Clone NIA:K0320C10_IMAGE:30056193 bone 5' read P
CA564044.1 Clone NIA:K0321C02_IMAGE:30056281 bone 5' read P
CA564063.1 Clone NIA:K0321E02_IMAGE:30056305 bone 5' read P
CA564155.1 Clone NIA:K0322G11_IMAGE:30056434 bone 5' read P
CA564177.1 Clone NIA:K0323B03_IMAGE:30056462 bone 5' read P
CA564248.1 Clone NIA:K0323H08_IMAGE:30056539 bone 5' read P
CA564789.1 Clone NIA:K0330C06_IMAGE:30057149 bone 5' read P
CA564963.1 Clone NIA:K0332C04_IMAGE:30057339 bone 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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