NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:261892     UniGene Mm.24096     Mus musculus (mouse)   Thbd
Thrombomodulin (Thbd)

Mouse protein-coding gene Thbd. Represented by 144 ESTs from 66 cDNA libraries. Corresponds to reference sequence NM_009378.3. [UniGene 261892 - Mm.24096]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033404.1 Thbd gene product M. musculus 100.0 576
NP_000352.1 THBD gene product H. sapiens 70.6 574
Other hits (2 of 12) [Show all]SpeciesId(%)Len(aa)
NP_113959.1 thrombomodulin precursor R. norvegicus 87.3 576
NP_001006954.1 thrombomodulin precursor C. lupus familiaris 72.1 577

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mixed; lung; pancreas; prostate; mammary gland; connective tissue; brain; eye; heart; inner ear; lymph node; muscle; kidney; thyroid; skin; uncharacterized tissue; stomach; uterus; bladder; salivary gland; intestine; spleen; oviduct; liver; extraembryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 G3|2 73.45 cM
UniSTS entry: Chr 2 AI385582
UniSTS entry: Chr 2 PMC209404P1
UniSTS entry: Chr 2 Thbd
UniSTS entry: Chr 2 X14432
UniSTS entry: Chr 2 Thbd
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK044928.1 Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014A08 product:THROMBOMODULIN PRECURSOR (FETOMODULIN) (TM), full insert sequence P
AK082885.1 Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430003G11 product:thrombomodulin, full insert sequence
CT010375.1 Mus musculus full open reading frame cDNA clone RZPDo836C0953D for gene Thbd, Thrombomodulin; complete cds, incl. stopcodon P
X14432.1 Mouse mRNA for thrombomodulin P
NM_009378.3 Mus musculus thrombomodulin (Thbd), mRNA PA
BC019154.1 Mus musculus thrombomodulin, mRNA (cDNA clone MGC:29138 IMAGE:5065481), complete cds PA

EST sequences (10 of 144) [Show all sequences]

BY000735.1 Clone 1020013I15 heart 5' read
BY001575.1 Clone 2124003M17 mixed 5' read P
BY007005.1 Clone G430010K05 mammary gland 5' read P
BY031812.1 Clone I1C0008H01 embryonic tissue 5' read
BY089420.1 Clone K630075M11 mixed 5' read P
BY134971.1 Clone L930053G01 embryonic tissue 5' read P
BY137015.1 Clone L930085J12 embryonic tissue 5' read P
BY137099.1 Clone L930086J02 embryonic tissue 5' read P
BY232023.1 Clone F930023D23 inner ear 5' read P
BY266547.1 Clone K430010G09 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help