> Histocompatibility 2, class II antigen E beta (H2-Eb1)
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UGID:261124     UniGene Mm.22564     Mus musculus (mouse)   H2-Eb1 Order cDNA clone, Links
Histocompatibility 2, class II antigen E beta (H2-Eb1)

Mouse protein-coding gene H2-Eb1. Represented by 464 ESTs from 62 cDNA libraries. Corresponds to reference sequence NM_010382.2. [UniGene 261124 - Mm.22564]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_034512.2 H-2 class II histocompatibility antigen, I-E beta chain precursor M. musculus 100.0 263
NP_001230894.1 HLA-DRB1 gene product H. sapiens 84.0 262
NP_001177324.1 uncharacterized protein LOC100462907 precursor X. laevis 57.3 246
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
NP_001008884.1 RT1-Db1 gene product R. norvegicus 86.0 263
XP_002714652.1 PREDICTED: MHC class II DR-beta chain-like O. cuniculus 84.5 264

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; mammary gland; lung; skin; spleen; thymus; embryonic tissue; pineal gland; intestine; pituitary gland; stomach; bone marrow; liver; mixed; lymph node; thyroid; prostate; heart; blood; muscle; pancreas; brain; connective tissue; eye; extraembryonic tissue; spinal cord; kidney; joint
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17 B1|17 17.98 cM
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (23)

X07239.1 Murine mRNA fragment for I-E (H-2S) chain P
M28591.1 Mus musculus MHC class II E-beta-b mRNA, partial cds P
M74709.1 Mouse MHC class II H2-IE-beta (haplotype u) mRNA, 5' end P
M28408.1 Mouse MHC class II I-E-beta-1 (haplotype H2b/K) gene, partial cds P
M73960.1 Mus musculus e-beta mRNA, exons and transposon P
M73959.1 Mus musculus E-beta mRNA, exons and transposon PA
D90275.1 Mus musculus mRNA for H2-IE-beta precursor, partial cds P
D90032.1 Mus musculus mRNA for H2-IE-beta chain precursor, partial cds P
AK155968.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830002H13 product:histocompatibility 2, class II antigen E beta, full insert sequence P
AK160485.1 Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210409D15 product:histocompatibility 2, class II antigen E beta, full insert sequence P
BC132163.1 Mus musculus histocompatibility 2, class II antigen E beta, mRNA (cDNA clone MGC:163794 IMAGE:40130440), complete cds P
BC132165.1 Mus musculus histocompatibility 2, class II antigen E beta, mRNA (cDNA clone MGC:163796 IMAGE:40130442), complete cds P
M11355.1 Mouse MHC class II I-E-S-beta polypeptide mRNA, 3' end cds P
M12826.1 Mouse MHC class II H2-IE-beta (haplotype u) mRNA, 3' end P
X52641.1 Mouse mRNA for I-A beta NOD P
X52642.1 Mouse mRNA for I-E beta NON P
X00958.1 Mouse mRNA for I-E(beta-b) gene PA
U28489.1 Mus musculus MHC class II E-beta (r) precursor (H2-Eb (r)) mRNA, complete cds P
U28490.1 Mus musculus MHC class II E-beta (p) precursor (H2-Eb (p)) mRNA, complete cds P
M36940.1 Mouse MHC class II E-beta-b mRNA, complete cds P
M36939.1 Mouse MHC class II E-beta-k mRNA, complete cds P
K01145.1 Mouse MHC class II H2-IE-beta gene (haplotype k), 3' mRNA P
NM_010382.2 Mus musculus histocompatibility 2, class II antigen E beta (H2-Eb1), mRNA P

EST sequences (10 of 464) [Show all sequences]

BY000983.1 Clone 1210002D12 lung 5' read P
BY078543.1 Clone K630015B18 stomach 5' read P
BY088207.1 Clone K630069K19 stomach 5' read P
BY088739.1 Clone K630071N20 stomach 5' read P
BY103902.1 Clone K630152O21 thymus 5' read P
BY162167.1 Clone I830037N10 bone marrow 5' read P
BY165221.1 Clone I830055N15 bone marrow 5' read P
BY174441.1 Clone F630002A15 uncharacterized tissue 5' read P
BY174564.1 Clone F630003D11 uncharacterized tissue 5' read P
BY174673.1 Clone F630004B10 uncharacterized tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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