> Synaptophysin (Syp)
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UGID:317299     UniGene Mm.223674     Mus musculus (mouse)   Syp Order cDNA clone, Links
Synaptophysin (Syp)

Mouse protein-coding gene Syp. Represented by 1533 ESTs from 98 cDNA libraries. Corresponds to reference sequence NM_009305.2. [UniGene 317299 - Mm.223674]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_033331.2 synaptophysin M. musculus 100.0 313
NP_036796.1 Syp gene product R. norvegicus 100.0 306
NP_003170.1 SYP gene product H. sapiens 97.4 312
NP_001080942.1 synaptophysin X. laevis 75.5 293
NP_001137449.1 sypa gene product D. rerio 73.8 293
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_521056.3 PREDICTED: synaptophysin P. troglodytes 97.5 238
XP_001106095.2 PREDICTED: synaptophysin-like M. mulatta 97.4 312

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; eye; embryonic tissue; mixed; dorsal root ganglion; bladder; thymus; pituitary gland; uncharacterized tissue; spinal cord; mammary gland; joint; pineal gland; intestine; pancreas; nasopharynx; olfactory mucosa; sympathetic ganglion; extraembryonic tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: X A-D|X 3.44 cM
UniSTS entry: Chr X AI848995 [Map Viewer]
UniSTS entry: G15886
UniSTS entry: Chr X X95818
UniSTS entry: Chr X Syp
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK043756.1 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830028G05 product:synaptophysin, full insert sequence P
AK090259.1 Mus musculus 1 month neonate cerebellum cDNA, RIKEN full-length enriched library, clone:G630029L13 product:synaptophysin, full insert sequence P
BC052354.1 Mus musculus synaptophysin, mRNA (cDNA clone IMAGE:6623553), partial cds PA
BC115645.1 Mus musculus synaptophysin, mRNA (cDNA clone IMAGE:40103059), partial cds P
BC115644.1 Mus musculus synaptophysin, mRNA (cDNA clone IMAGE:40103057), partial cds P
X95818.1 Mus musculus mRNA for synaptophysin PA
NM_009305.2 Mus musculus synaptophysin (Syp), mRNA PA
BC014823.1 Mus musculus synaptophysin, mRNA (cDNA clone MGC:25678 IMAGE:4507116), complete cds PA

EST sequences (10 of 1533) [Show all sequences]

CA749900.1 Clone IMAGE:6828479 brain 5' read P
CA750929.1 Clone IMAGE:6828259 brain 5' read P
CA752126.1 Clone IMAGE:6832229 brain 5' read P
BY003319.1 Clone E530112D13 brain 5' read
BY008854.1 Clone G630033K22 brain 5' read
BY009100.1 Clone G630046E07 mixed 5' read P
BY009156.1 Clone G630049P22 mixed 5' read P
BY103362.1 Clone K630150G19 brain 5' read P
BY143918.1 Clone L930182H03 embryonic tissue 5' read P
BY237242.1 Clone K230001A09 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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