> Coagulation factor C homolog (Limulus polyphemus) (Coch)
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UGID:260735     UniGene Mm.21325     Mus musculus (mouse)   Coch Order cDNA clone, Links
Coagulation factor C homolog (Limulus polyphemus) (Coch)

Mouse protein-coding gene Coch. Represented by 96 ESTs from 40 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 260735 - Mm.21325]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001185764.1 cochlin precursor M. musculus 100.0 551
NP_001128530.1 COCH gene product H. sapiens 96.2 549
NP_001003823.1 coch gene product D. rerio 63.0 525
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_003361379.1 PREDICTED: cochlin S. scrofa 96.2 550
XP_002718170.1 PREDICTED: cochlin O. cuniculus 96.2 550

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: inner ear; brain; embryonic tissue; mixed; spleen; skin; thymus; eye; oviduct; ovary; nasopharynx; olfactory mucosa; uterus; uncharacterized tissue; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12 C1|12 22.11 cM
UniSTS entry: Chr 12 Coch
UniSTS entry: Chr 12 AF006741
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK028690.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732436E03 product:coagulation factor C homolog (Limulus polyphemus), full insert sequence P
Z78163.1 M.musculus partial cochlear mRNA (clone 319D3) P
BC045137.1 Mus musculus coagulation factor C homolog (Limulus polyphemus), mRNA (cDNA clone MGC:54694 IMAGE:6306601), complete cds PA
AK156430.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830021H04 product:coagulation factor C homolog (Limulus polyphemus), full insert sequence P
AK137336.1 Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630013K04 product:coagulation factor C homolog (Limulus polyphemus), full insert sequence P
AK171875.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830016F16 product:coagulation factor C homolog (Limulus polyphemus), full insert sequence P
NM_001198835.1 Mus musculus coagulation factor C homolog (Limulus polyphemus) (Coch), transcript variant 2, mRNA PA
AF006741.1 Mus musculus Coch-5B2 mRNA, complete cds P
NM_007728.5 Mus musculus coagulation factor C homolog (Limulus polyphemus) (Coch), transcript variant 1, mRNA PA

EST sequences (10 of 96) [Show all sequences]

BY145840.1 Clone L930212B08 embryonic tissue 5' read P
BY212486.1 Clone F830016F16 spleen 5' read P
BY213256.1 Clone F830021H04 spleen 5' read P
BY229975.1 Clone F930011M20 inner ear 5' read P
BY231681.1 Clone F930021B06 inner ear 5' read P
BY231864.1 Clone F930022F16 inner ear 5' read
BY232675.1 Clone F930026P16 inner ear 5' read
BY232847.1 Clone F930027M23 inner ear 5' read P
BY233819.1 Clone F930032F19 inner ear 5' read P
BY235276.1 Clone F930040K11 inner ear 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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