> Heat shock protein 1 (chaperonin) (Hspd1)
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UGID:256476     UniGene Mm.1777     Mus musculus (mouse)   Hspd1 Order cDNA clone, Links
Heat shock protein 1 (chaperonin) (Hspd1)

Mouse protein-coding gene Hspd1. Represented by 1019 ESTs from 228 cDNA libraries. Corresponds to reference sequence NM_010477.4. [UniGene 256476 - Mm.1777]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_034607.3 60 kDa heat shock protein, mitochondrial M. musculus 100.0 572
NP_071565.2 Hspd1 gene product R. norvegicus 100.0 572
NP_002147.2 HSPD1 gene product H. sapiens 98.6 572
NP_001083970.1 heat shock 60kDa protein 1 (chaperonin) X. laevis 94.0 578
NP_851847.1 hspd1 gene product D. rerio 92.0 574
NP_511115.2 heat shock protein 60, isoform A D. melanogaster 82.4 572
NP_497429.1 Protein HSP-60, isoform a C. elegans 78.0 564
NP_850203.1 chaperonin CPN60-like 1 A. thaliana 65.5 582
NP_013360.1 chaperone ATPase HSP60 S. cerevisiae 62.1 570
XP_001691353.1 chaperonin 60C C. reinhardtii 61.9 527
XP_956500.2 heat shock protein 60, mitochondrial precursor N. crassa 61.6 489
Other hits (2 of 62) [Show all]SpeciesId(%)Len(aa)
NP_001160080.1 60 kDa heat shock protein, mitochondrial B. taurus 99.0 572
XP_002712414.1 PREDICTED: chaperonin O. cuniculus 99.0 572

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mixed; mammary gland; kidney; brain; lung; liver; extraembryonic tissue; intestine; heart; pancreas; skin; thymus; testis; joint; bone; bone marrow; eye; stomach; uncharacterized tissue; spleen; fertilized ovum; ovary; molar; blood; sympathetic ganglion; connective tissue; tongue; adrenal gland; pituitary gland; bladder; spinal cord; dorsal root ganglion; uterus; muscle; inner ear; prostate
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1 C1.2|1
UniSTS entry: Chr 14 RH125548
UniSTS entry: Ndufb11
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (31)

AK088844.1 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430028C20 product:heat shock protein, 60 kDa, full insert sequence P
AK219639.1 Mus musculus cDNA, clone:Y2G0149C02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK218891.1 Mus musculus cDNA, clone:Y2G0146K21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK217800.1 Mus musculus cDNA, clone:Y2G0143A19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK217294.1 Mus musculus cDNA, clone:Y2G0141F03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK216069.1 Mus musculus cDNA, clone:Y2G0137B12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK213559.1 Mus musculus cDNA, clone:Y2G0128L06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK212216.1 Mus musculus cDNA, clone:Y2G0124D20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK212204.1 Mus musculus cDNA, clone:Y2G0124D06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK208814.1 Mus musculus cDNA, clone:Y2G0112N12, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK208190.1 Mus musculus cDNA, clone:Y2G0110G10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK206927.1 Mus musculus cDNA, clone:Y2G0106G07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK206160.1 Mus musculus cDNA, clone:Y2G0103P03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK206123.1 Mus musculus cDNA, clone:Y2G0103N01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK202454.1 Mus musculus cDNA, clone:Y1G0141J02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK190605.1 Mus musculus cDNA, clone:Y1G0103E06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK187612.1 Mus musculus cDNA, clone:Y0G0142H04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK184625.1 Mus musculus cDNA, clone:Y0G0130O12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK182202.1 Mus musculus cDNA, clone:Y0G0121D01, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search P
AK181116.1 Mus musculus cDNA, clone:Y0G0116P22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK180922.1 Mus musculus cDNA, clone:Y0G0116F13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000027123, based on BLAT search
AK179525.1 Mus musculus cDNA, clone:Y0G0110L22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK177219.1 Mus musculus cDNA, clone:Y0G0102A21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000061636, based on BLAT search P
AK143882.1 Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520001E04 product:heat shock protein 1 (chaperonin), full insert sequence P
AK146831.1 Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920062F22 product:heat shock protein 1 (chaperonin), full insert sequence P
BC106112.1 Mus musculus heat shock protein 1 (chaperonin), mRNA (cDNA clone IMAGE:5032757), partial cds PA
X53584.1 Mouse mRNA for HSP60 protein (clones 3T3-7, -9, and -M1) P
X55023.1 Mouse cDNA for heat shock protein 65 P
BC016400.1 Mus musculus heat shock protein 1 (chaperonin), mRNA (cDNA clone MGC:6709 IMAGE:3585270), complete cds PA
BC018545.1 Mus musculus heat shock protein 1 (chaperonin), mRNA (cDNA clone IMAGE:3602208), complete cds PA
NM_010477.4 Mus musculus heat shock protein 1 (chaperonin) (Hspd1), nuclear gene encoding mitochondrial protein, mRNA PA

EST sequences (10 of 1019) [Show all sequences]

CA565934.1 Clone NIA:K0344A09_IMAGE:30058472 bone 5' read P
CA567404.1 Clone NIA:K0413G02_IMAGE:30060361 bone marrow 5' read P
CA569134.1 Clone NIA:K0438C10_IMAGE:30062721 bone marrow 5' read P
CA569413.1 Clone NIA:K0443A03_IMAGE:30063170 bone marrow 5' read P
CA751744.1 Clone IMAGE:6830130 brain 5' read P
BY005461.1 Clone F420010M10 spleen 5' read P
BY010177.1 Clone G730017J19 lung 5' read P
BY010375.1 Clone G730018L21 lung 5' read P
BY010603.1 Clone G730021C13 lung 5' read P
BY010913.1 Clone G730023A21 lung 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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