Ornithine decarboxylase (LEODC)

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UGID:255233 UniGene Les.3525 Solanum lycopersicum (tomato) LEODC

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Ornithine decarboxylase (LEODC)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
XP_002307756.1	predicted protein	P. trichocarpa	69.8	406
NP_012737.1	Ornithine decarboxylase, catalyzes the first step in polyamine biosynthesis; degraded in a proteasome-dependent manner in the presence of excess polyamines; Spe1p	S. cerevisiae	47.0	379
XP_001697502.1	ornithine decarboxylase 1	C. reinhardtii	46.0	372
NP_571876.1	ornithine decarboxylase 1	D. rerio	45.3	369

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	cDNA Sources:	leaf; cell culture; flower; fruit; root; seed; callus

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

AK247048.1	Solanum lycopersicum cDNA, clone: LEFL1022BH11, HTC in leaf	P
AF029349.2	Lycopersicon esculentum ornithine decarboxylase (LEODC) mRNA, complete cds	P
AF030292.1	Lycopersicon esculentum ornithine decarboxylase mRNA, complete cds	P

EST sequences (10 of 27) [Show all sequences]

BP889031.1	Clone FA55DD04	fruit	5' read	P
BP900311.1	Clone LA22BG07	leaf	5' read	P
BP900989.1	Clone LA24CC01	leaf	5' read	P
DV104538.1	Clone CK-RS-1-I15	root		P
EG364417.1	Clone LEC5R06E06	root		P
DB679856.1	Clone LEFL1005CA03	leaf	5' read	P
DB688057.1	Clone LEFL1031DC11	leaf	5' read	P
DB702061.1	Clone LEFL1075CC12	leaf	5' read	P
DB724402.1	Clone LEFL2046G20	fruit	5' read	P
DB713977.1	Clone LEFL2015K05	fruit	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria