> TRNA methyltransferase 13 homolog (S. cerevisiae) (TRMT13)
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UGID:4540696     UniGene Hs.729095     Homo sapiens (human)   TRMT13 Order cDNA clone, Links
TRNA methyltransferase 13 homolog (S. cerevisiae) (TRMT13)

Human protein-coding gene TRMT13. Represented by 144 ESTs from 83 cDNA libraries. Corresponds to reference sequence NM_019083.2. [UniGene 4540696 - Hs.729095]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_061956.2 TRMT13 gene product H. sapiens 100.0 480
NP_084292.1 Trmt13 gene product M. musculus 89.0 475
NP_001014331.1 trmt13 gene product D. rerio 61.7 444
NP_001085344.1 tRNA methyltransferase 13 homolog X. laevis 61.7 441
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_001160498.1 PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM13 homolog isoform 4 P. troglodytes 99.4 480
XP_003892308.1 PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM13 homolog P. anubis 99.0 480

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; placenta; bone marrow; kidney; stomach; uncharacterized tissue; mixed; skin; adrenal gland; embryonic tissue; uterus; eye; lymph node; liver; esophagus; connective tissue; thyroid; lung; intestine; ovary; mouth; mammary gland; muscle; cervix; pancreas; prostate; nerve; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p21.2
UniSTS entry: Chr 1 SHGC-34523 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

BC057226.1 Homo sapiens coiled-coil domain containing 76, mRNA (cDNA clone IMAGE:4699485) PA
AK001149.1 Homo sapiens cDNA FLJ10287 fis, clone HEMBB1001387 P
AK002081.1 Homo sapiens cDNA FLJ11219 fis, clone PLACE1008122 P
BC075811.1 Homo sapiens coiled-coil domain containing 76, mRNA (cDNA clone MGC:87928 IMAGE:5104751), complete cds PA
NM_019083.2 Homo sapiens tRNA methyltransferase 13 homolog (S. cerevisiae) (TRMT13), mRNA PA
AK289404.1 Homo sapiens cDNA FLJ78543 complete cds P
AK294738.1 Homo sapiens cDNA FLJ52491 complete cds, highly similar to Coiled-coil domain-containing protein 76 P
AK298941.1 Homo sapiens cDNA FLJ54964 complete cds, highly similar to Coiled-coil domain-containing protein 76 P
AK295828.1 Homo sapiens cDNA FLJ52502 complete cds, highly similar to Coiled-coil domain-containing protein 76 P

EST sequences (144)

AA971154.1 Clone IMAGE:1582427 mixed 3' read A
AI028617.1 Clone IMAGE:1644107 testis 3' read
AI276467.1 Clone IMAGE:1877762 mixed 3' read
AI279704.1 Clone IMAGE:1891557 placenta 3' read P
AI383754.1 Clone IMAGE:2067777 embryonic tissue 3' read A
AI399840.1 Clone IMAGE:2113472 mixed 3' read A
AI401382.1 Clone IMAGE:2113603 mixed 3' read A
F27801.1 Clone s4000020H09 muscle
AI744364.1 Clone IMAGE:2217875 ovary 3' read
AI922312.1 Clone IMAGE:2453138 uterus 3' read A
AI922313.1 Clone IMAGE:2453140 uterus 3' read A
AI922321.1 Clone IMAGE:2453137 uterus 3' read A
CD104387.1 Clone IMAGE:30373312 mixed 5' read A
AI874119.1 Clone IMAGE:2439278 uterus 3' read A
CF272221.1 Clone IMAGE:30512398 brain 5' read P
AW298754.1 Clone IMAGE:2732510 uncharacterized tissue 3' read A
AW474317.1 Clone IMAGE:2771048 uterus 3' read P
CK300144.1 Clone UI-E-EJ1-ajy-p-12-0-UI eye 3' read A
AW505561.1 Clone IMAGE:3081819 lymph node 5' read P
CD629663.1 uncharacterized tissue P
CD629664.1 uncharacterized tissue
CD629665.1 uncharacterized tissue P
CD629666.1 uncharacterized tissue P
CD629667.1 uncharacterized tissue P
CD629662.1 uncharacterized tissue P
CN265128.1 embryonic tissue 5' read
AW954475.1 uncharacterized tissue
AW958214.1 uncharacterized tissue
CN310537.1 embryonic tissue 5' read P
CN310538.1 embryonic tissue 5' read
CN310539.1 embryonic tissue 5' read P
AW977790.1 uncharacterized tissue
BE162826.1 thyroid P
BE171964.1 thyroid P
CR745287.1 Clone IMAGp998G051895_;_IMAGE:769948 ovary 5' read A
BP197213.1 Clone ADG04679 adrenal gland 5' read P
BP208724.1 Clone CBL01747 brain 5' read
BP222696.1 Clone COR04183 skin 5' read P
BP272938.1 Clone KAT07171 stomach 5' read
BP275093.1 Clone KDN02815 kidney 5' read P
BP275529.1 Clone KDN03805 kidney 5' read P
BP281913.1 Clone KMR02777 bone marrow 5' read P
BP283389.1 Clone KMR06487 bone marrow 5' read P
D59546.1 Clone GEN-045D07 brain 3' read A
BE886117.1 Clone IMAGE:3911305 uterus 5' read P
DN996630.1 Clone TC113242 mammary gland 5' read P
AV701459.1 Clone ADAAGA01 adrenal gland 5' read A
AV755592.1 Clone BMFAPA09 bone marrow 5' read P
AU119036.2 Clone HEMBA1004910 embryonic tissue 5' read
AU120776.1 Clone HEMBB1001387 mixed 5' read P
BF197731.1 Clone IMAGE:3652905 skin 3' read A
DA171631.1 Clone BRAMY2033923 brain 5' read
DA222298.1 Clone BRAWH3014644 brain 5' read P
DA249796.1 Clone BRAWH3049539 brain 5' read
DA027758.1 Clone ASTRO2011306 brain 5' read P
DA219628.1 Clone BRAWH3011159 brain 5' read P
AU138229.1 Clone PLACE1008122 placenta 5' read P
DA454758.1 Clone CTONG2028009 mouth 5' read
AU145467.1 Clone HEMBA1004910 embryonic tissue 3' read A
AU146750.1 Clone HEMBB1001387 mixed 3' read
DA993381.1 Clone SYNOV4005854 connective tissue 5' read P
AU157527.1 Clone PLACE1008122 placenta 3' read A
DA857185.1 Clone PLACE7008412 placenta 5' read P
DB017131.1 Clone TESOP2006599 esophagus 5' read
BF511006.1 Clone IMAGE:3087842 uncharacterized tissue 3' read A
BF514089.1 Clone IMAGE:3071246 uncharacterized tissue 3' read A
DB306289.1 Clone BRAWH3049539 brain 3' read
DB278260.1 Clone UTERU3004227 uterus 5' read P
DB071207.1 Clone TESTI4013954 testis 5' read A
DW465411.1 liver
DB516190.1 Clone H013050G07 testis 3' read A
DB517416.1 Clone H013055F17 testis 3' read A
DB502971.1 Clone H033086B06 brain 5' read P
DB445379.1 Clone H013019O15 testis 5' read P
DB523033.1 Clone H013078C11 testis 3' read A
DB449006.1 Clone H013039I18 testis 5' read
BG253577.1 Clone IMAGE:4472644 liver 5' read P
BG255616.1 Clone IMAGE:4475816 prostate 5' read
EB362344.1 Clone ki26c05 eye P
EB362583.1 Clone ki29e07 eye
EB386993.1 Clone nbj23h08 brain 5' read
DB450726.1 Clone H013050G07 testis 5' read P
DB451892.1 Clone H013055F17 testis 5' read P
DB574155.1 Clone H033086B06 brain 3' read A
DB457555.1 Clone H013078C11 testis 5' read
DB477952.1 Clone H023077F17 brain 5' read P
DB514092.1 Clone H013039I18 testis 3' read A
DB497859.1 Clone H033067H16 brain 5' read P
DB498300.1 Clone H033069C08 brain 5' read P
BG393852.1 Clone IMAGE:4525179 uncharacterized tissue 5' read P
BG531150.1 Clone IMAGE:4699478 testis 5' read
BG531263.1 Clone IMAGE:4699485 testis 5' read P
BG534692.1 Clone IMAGE:4663812 lung 5' read
BG718756.1 Clone IMAGE:4828752 testis 5' read P
BI224598.1 Clone IMAGE:5104751 cervix 5' read P
DC367886.1 Clone NT2RI2014123 5' read P
DC385717.1 Clone SKMUS2004449 muscle 5' read P
BI461870.1 Clone IMAGE:5273207 testis 5' read P
DC335416.1 Clone BRHIP3033523 brain 5' read P
DC320936.1 Clone BRAWH3005173 brain 5' read P
BI753954.1 Clone IMAGE:5193738 brain 5' read P
BI762940.1 Clone IMAGE:5188464 mixed 5' read A
BI770153.1 Clone IMAGE:5203019 mixed 5' read
BI770934.1 Clone IMAGE:5208973 mixed 5' read P
BI827026.1 Clone IMAGE:5167672 brain 5' read P
BM453294.1 Clone IMAGE:5527644 skin 5' read
BM469807.1 Clone IMAGE:5538727 skin 5' read
BM473404.1 Clone IMAGE:5561874 intestine 5' read P
BM692890.1 Clone UI-E-CK1-afk-b-10-0-UI eye 5' read
BM727866.1 Clone UI-E-EJ0-ait-i-13-0-UI eye 5' read
BM838371.1 Clone S12SNU216-35-F01 lymph node 5' read
BM977257.1 Clone UI-CF-DU1-ads-f-01-0-UI lung 3' read A
BM978500.1 Clone UI-CF-DU1-adk-h-17-0-UI lung 3' read A
AL699548.1 Clone DKFZp686F20114 muscle 5' read P
BQ187089.1 Clone UI-E-EJ1-ajy-p-12-0-UI eye 5' read
BQ614335.1 Clone IMAGE:6028520 pancreas 3' read A
BQ614556.1 Clone IMAGE:6028520 pancreas 5' read
BQ718951.1 Clone IMAGE:6189731 nerve 5' read A
FN170571.1 Clone 290502_0692_0440
FN135619.1 Clone 209956_2293_0938
FN149884.1 Clone 242419_0937_2638
FN154147.1 Clone 251759_0466_1147
FN176925.1 Clone 316026_3392_1041
BU741542.1 Clone UI-E-EJ0-ait-i-13-0-UI eye 3' read A
AA243466.1 Clone IMAGE:685288 lymph node 3' read
HY023238.1 Clone H04D079G23 testis P
HY041969.1 Clone H04D147O17 testis P
HY228553.1 Clone H04D147O17 testis P
CA413099.1 Clone UI-H-EZ0-bap-o-07-0-UI bone 3' read A
AA377261.1 intestine 3' read A
AA377262.1 intestine 5' read
AA292064.1 Clone IMAGE:725392 ovary 3' read A
AA292164.1 Clone IMAGE:725392 ovary 5' read
AA411886.1 Clone IMAGE:730611 testis 5' read
AA411887.1 Clone IMAGE:730611 testis 3' read A
AA430376.1 Clone IMAGE:769876 ovary 3' read A
AA430728.1 Clone IMAGE:769876 ovary 5' read
AA287558.1 Clone IMAGE:700977 lymph node 3' read
AA286765.1 Clone IMAGE:700981 lymph node 5' read P
AA476706.1 Clone IMAGE:783991 embryonic tissue 5' read
AA707487.1 Clone 1292004 testis 3' read A
AA804788.1 Clone IMAGE:1319258 lymph node 3' read A
AA853970.1 Clone IMAGE:1393849 testis 3' read A
AA889677.1 Clone IMAGE:1409737 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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