Transcribed locus, strongly similar to NP_001258816.1 SLIT-ROBO Rho GTPase-activating protein 2D [Homo sapiens]

NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:2978632 UniGene Hs.698027 Homo sapiens (human)

Links

Transcribed locus, strongly similar to NP_001258816.1 SLIT-ROBO Rho GTPase-activating protein 2D [Homo sapiens]

Human putative protein-coding gene. Represented by 28 ESTs from 22 cDNA libraries. [UniGene 2978632 - Hs.698027]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_003893253.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2	P. anubis	98.3	290
XP_001163967.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2 isoform 6	P. troglodytes	98.3	290
XP_003482706.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2 isoform 2	S. scrofa	98.3	289
NP_001258816.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SLIT-ROBO Rho GTPase-activating protein 2D	H. sapiens	98.3	286
NP_001074480.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SLIT-ROBO Rho GTPase-activating protein 2	M. musculus	97.9	290
NP_001192794.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SLIT-ROBO Rho GTPase-activating protein 2	B. taurus	97.9	290
XP_856820.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2 isoform 4	C. lupus familiaris	97.9	289
XP_004013614.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2-like isoform 1	O. aries	97.9	289
NP_001041700.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	srgap2a gene product	D. rerio	86.1	288
NP_001087899.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	SLIT-ROBO Rho GTPase activating protein 2	X. laevis	85.6	299
Other hits (2 of 14) [Show all]		Species	Id(%)	Len(aa)
NP_001128430.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Srgap2 gene product	R. norvegicus	97.6	290
XP_001491388.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: SLIT-ROBO Rho GTPase-activating protein 2	E. caballus	97.6	290

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	placenta; bone marrow; skin; embryonic tissue; intestine; brain; mammary gland; lymph node; lung; ovary; mixed; uterus; kidney; eye

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	1
	UniSTS entry:	Chr 1	RH48365

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (1)

BC036880.1

Homo sapiens SLIT-ROBO Rho GTPase activating protein 2 pseudogene 1, mRNA (cDNA clone IMAGE:5243590), with apparent retained intron

EST sequences (28)

AA897783.1	Clone IMAGE:1508766	mixed	3' read
AW500460.1	Clone IMAGE:3076648	lymph node	5' read	P
AW503614.1	Clone IMAGE:3079280	lymph node	5' read	P
AW853481.1		intestine		P
CN277773.1		embryonic tissue	5' read	P
CN359758.1		embryonic tissue	5' read
BE080853.1		mammary gland
BF085677.1		placenta		P
BF211854.1	Clone IMAGE:4047315	bone marrow	5' read
DN915222.1	Clone MCF7_RNA_L_19_N02	mammary gland
BF691164.1	Clone IMAGE:4332492	skin	5' read	P
DA333816.1	Clone BRHIP3032880	brain	5' read	P
BF847592.1		lung
BF434669.1	Clone IMAGE:3644788	ovary	3' read
DA833148.1	Clone PLACE1010574	placenta	5' read
BF571976.1	Clone IMAGE:4252536	skin	5' read
BF572981.1	Clone IMAGE:4253204	skin	5' read
DB284609.1	Clone UTERU3012596	uterus	5' read	P
BF940607.1	Clone IMAGE:3436259	ovary	3' read
BF956729.1		brain		P
BG401839.1	Clone IMAGE:4594449	kidney	5' read
BG538586.1	Clone IMAGE:4691906	lung	5' read	P
BI914629.1	Clone IMAGE:5243590	brain	5' read	P
BM478763.1	Clone IMAGE:5526810	skin	5' read	P
BQ186687.1	Clone UI-E-EJ1-ajr-h-14-0-UI	eye	5' read
BU155143.1	Clone IMAGE:6147485	skin	5' read	P
BU166315.1	Clone IMAGE:6147556	skin	5' read
BU928982.1	Clone IMAGE:6655033	brain	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria