> Synapse defective 1, Rho GTPase, homolog 2 (C. elegans) (SYDE2)
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UGID:2739815     UniGene Hs.670497     Homo sapiens (human)   SYDE2 Links
Synapse defective 1, Rho GTPase, homolog 2 (C. elegans) (SYDE2)

Human protein-coding gene SYDE2. Represented by 23 ESTs from 17 cDNA libraries. EST representation biased toward embryoid body. Corresponds to reference sequence NM_032184.1. [UniGene 2739815 - Hs.670497]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_115560.1 SYDE2 gene product H. sapiens 100.0 1193
NP_001159536.1 synapse defective 1, Rho GTPase, homolog 2 M. musculus 79.7 1176
NP_001163785.1 RhoGAP100F, isoform B D. melanogaster 53.1 147
XP_696571.5 PREDICTED: rho GTPase-activating protein SYDE2-like D. rerio 52.9 635
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
XP_513525.2 PREDICTED: rho GTPase-activating protein SYDE2 isoform 3 P. troglodytes 99.0 1193
XP_001108631.2 PREDICTED: rho GTPase-activating protein SYDE2-like M. mulatta 96.9 1192

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: embryoid body [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; eye; embryonic tissue; mammary gland; ovary; larynx; thyroid; intestine; liver; kidney; testis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p22.3
UniSTS entry: Chr 4 D11S2843
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

NM_032184.1 Homo sapiens synapse defective 1, Rho GTPase, homolog 2 (C. elegans) (SYDE2), mRNA P
AL834286.1 Homo sapiens mRNA; cDNA DKFZp667B2411 (from clone DKFZp667B2411) PA

EST sequences (23)

CB045341.1 Clone IMAGE:3218488 intestine 5' read
AI741865.1 Clone IMAGE:2368300 mixed 3' read A
AI935491.1 Clone IMAGE:2463245 kidney 3' read
BX501551.1 Clone DKFZp779K1363 liver 5' read P
AW138693.1 Clone IMAGE:2716393 mixed 3' read PA
CN483653.1 Clone hw35f09 eye 5' read P
CN483144.1 Clone hw28h06 eye 5' read P
CN276934.1 embryonic tissue 5' read P
CN289525.1 embryonic tissue 5' read P
CR749126.1 Clone IMAGp998B217399_;_IMAGE:2716340 mixed 5' read P
CR745273.1 Clone IMAGp998M055879_;_IMAGE:2368300 mixed 5' read P
CV369580.1 larynx
CV575362.1 Clone oe35c12 eye 5' read P
DN995370.1 Clone TC102643 mammary gland 5' read P
BF196265.1 Clone IMAGE:3569554 ovary 3' read P
AU141312.1 Clone THYRO1000381 thyroid 5' read P
AU158902.1 Clone THYRO1000381 thyroid 3' read P
BF753754.1 intestine
BF759553.1 intestine P
BF980793.1 Clone IMAGE:4395377 intestine 5' read P
BF940587.1 Clone IMAGE:3436157 ovary 3' read P
BG989651.1 larynx
HY014706.1 Clone H04D050K16 testis P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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