Chromosome 5 open reading frame 46 (C5orf46)

Restricted Expression:

prostate cancer [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

mixed; vascular; embryonic tissue; muscle; prostate; mammary gland; brain; trachea; liver; heart; ovary

NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs

UGID:2729356 UniGene Hs.660038 Homo sapiens (human) C5orf46

Order cDNA clone, Links

Chromosome 5 open reading frame 46 (C5orf46)

Human protein-coding gene C5orf46. Represented by 17 ESTs from 14 cDNA libraries. EST representation biased toward prostate cancer. Corresponds to reference sequence NM_206966.2. [UniGene 2729356 - Hs.660038]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
XP_001143464.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: uncharacterized protein C5orf46 homolog isoform 1	P. troglodytes	100.0	86
NP_996849.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	C5orf46 gene product	H. sapiens	100.0	86
Other hits (		Species	Id(%)	Len(aa)
XP_003900368.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: uncharacterized protein C5orf46 homolog isoform 1	P. anubis	97.7	86
XP_001096270.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: hypothetical protein LOC707842	M. mulatta	93.4	90

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	5
	Map position:	5q32

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AY358656.1	Homo sapiens clone DNA56859 AVLV472 (UNQ472) mRNA, complete cds	PA
NM_206966.2	Homo sapiens chromosome 5 open reading frame 46 (C5orf46), mRNA	PA
BC021680.1	Homo sapiens chromosome 5 open reading frame 46, mRNA (cDNA clone MGC:23985 IMAGE:3931172), complete cds	A
AK289403.1	Homo sapiens cDNA FLJ76367 complete cds	P

EST sequences (17)

BX115935.1	Clone IMAGp998D141855_;_IMAGE:754525	mixed		P
AI591033.1	Clone IMAGE:2260931	ovary	3' read	A
CD356344.1	Clone IMAGE:30404246	vascular	5' read	A
CD556191.1		embryonic tissue	5' read
BX490381.1	Clone DKFZp686M2276	muscle	5' read
CV028796.1		mixed	5' read
BF102589.1	Clone IMAGE:3931172	prostate	5' read
BF327364.1		mammary gland
DA026376.1	Clone ASTRO2009592	brain	5' read	P
DA374994.1	Clone BRTHA2006128	brain	5' read
DB204939.1	Clone TRACH2016589	trachea	5' read
DW408884.1		liver
W23624.1	Clone IMAGE:327796	heart	3' read	A
W35214.1	Clone IMAGE:327796	heart	5' read
GD256504.1	Clone da0_000632		5' read
AA436232.1	Clone IMAGE:754525	mixed	5' read	P
AA436233.1	Clone IMAGE:754525	mixed	3' read	A

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria