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UGID:2729127     UniGene Hs.659809     Homo sapiens (human)   APOBEC3F
Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (APOBEC3F)

Human protein-coding gene APOBEC3F. Represented by 62 ESTs from 45 cDNA libraries. EST representation biased toward blastocyst. Corresponds to 2 reference sequences (different isoforms). [UniGene 2729127 - Hs.659809]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_660341.2 APOBEC3F gene product H. sapiens 100.0 372
NP_084531.2 Apobec3 gene product M. musculus 46.8 188
Other hits (2 of 8) [Show all]SpeciesId(%)Len(aa)
XP_525658.2 PREDICTED: DNA dC->dU-editing enzyme APOBEC-3F isoform 2 P. troglodytes 98.4 372
NP_001035832.1 APOBEC3F gene product M. mulatta 89.3 372

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: blastocyst [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; pharynx; bone marrow; lymph node; lung; uncharacterized tissue; mixed; intestine; heart; uterus; vascular; brain; skin; blood; prostate; placenta; testis; connective tissue; thymus; tonsil; mammary gland; eye; stomach; lymph; spleen; pancreas; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22q13.1
UniSTS entry: Chr 1 L18426
UniSTS entry: Chr 1 G38154
UniSTS entry: Chr 1 L18506
UniSTS entry: Chr 1 L17688
UniSTS entry: Chr 1 D1S1423
UniSTS entry: Chr 1 D11S3316
UniSTS entry: Chr 1 GDB:314949
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 1 D8S2279
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

CR456395.1 Homo sapiens bK150C2.4 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.bK150C2.4)
NM_001006666.1 Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (APOBEC3F), transcript variant 2, mRNA A
NM_145298.5 Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F (APOBEC3F), transcript variant 1, mRNA PA
AK294810.1 Homo sapiens cDNA FLJ60505 complete cds, highly similar to Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F P
U38435.1 Human clone JkA6 mRNA induced upon T-cell activation, 3' end
JF262037.1 Homo sapiens apolipoprotein B mRNA editing enzyme cytidine deaminase (APOBEC3F) mRNA, complete cds P
BC038808.1 Homo sapiens apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F, mRNA (cDNA clone MGC:46498 IMAGE:5227163), complete cds PA

EST sequences (62)

AI092348.1 Clone IMAGE:1692960 heart 3' read A
BX112841.1 Clone IMAGp998B014299_;_IMAGE:1692960 heart
AI217046.1 Clone IMAGE:1732096 heart 3' read A
AI435084.1 Clone IMAGE:2126387 mixed 3' read A
AI459310.1 Clone IMAGE:2149371 lung 3' read
AI692934.1 Clone IMAGE:2338790 lung 3' read
AI799894.1 Clone IMAGE:2321645 prostate 3' read A
AI820065.1 Clone IMAGE:2369080 mixed 3' read A
AI910810.1 Clone IMAGE:2393154 intestine 3' read A
BX326730.1 Clone CS0DC010YC13 uncharacterized tissue 5' read P
BX332251.2 Clone CS0DC010YC13 uncharacterized tissue 5' read P
BX367450.1 Clone CS0DC010YC13 uncharacterized tissue 5' read P
BX388243.2 Clone CS0DC010YC13 uncharacterized tissue 5' read P
CD656372.1 Clone IMAGE:30424105 embryonic tissue 5' read P
CD699928.1 pharynx
AW074983.1 Clone IMAGE:2572253 bone marrow 3' read A
CF142810.1 Clone IMAGE:3101525 lymph node 5' read P
CF143012.1 Clone IMAGE:3100893 lymph node 5' read P
CF143013.1 Clone IMAGE:3100895 lymph node 5' read
AW505140.1 Clone IMAGE:3080701 lymph node 5' read P
AW821720.1 stomach
CR748432.1 Clone IMAGp998K184734_;_IMAGE:1929737 lung 5' read
BP203360.1 Clone CAE06356 vascular 5' read P
CV382337.1 intestine P
CX163966.1 Clone IMAGE:7467233 embryonic tissue 5' read P
CX165430.1 Clone IMAGE:7468912 embryonic tissue 5' read P
BE888653.1 Clone IMAGE:3914722 uterus 5' read
DR006417.1 Clone TC124048 intestine 5' read
BE892372.1 Clone IMAGE:3919234 skin 5' read P
DA221480.1 Clone BRAWH3013531 brain 5' read P
DA843876.1 Clone PLACE6011666 placenta 5' read P
DA816835.1 Clone PEBLM2004674 blood 5' read
DB049494.1 Clone TESTI2038822 testis 5' read P
DA872088.1 Clone PROST2008835 prostate 5' read
BF508948.1 Clone IMAGE:3086016 uncharacterized tissue 3' read A
BF511267.1 Clone IMAGE:3085045 uncharacterized tissue 3' read A
DA985981.1 Clone SYNOV2019133 connective tissue 5' read P
DB146388.1 Clone THYMU3021591 thymus 5' read P
DB278397.1 Clone UTERU3004405 uterus 5' read P
DB104806.1 Clone THYMU2005227 thymus 5' read P
DB561314.1 Clone H033037I10 brain 3' read A
DB490973.1 Clone H033037I10 brain 5' read
BG280786.1 Clone IMAGE:4543467 skin 5' read P
BG674016.1 Clone IMAGE:4745686 skin 5' read
BG744406.1 Clone IMAGE:4849619 blood 5' read
BG758984.1 Clone IMAGE:4851048 tonsil 5' read P
N75340.1 Clone IMAGE:298834 lung 3' read A
EL734293.1 mixed 5' read P
BI833482.1 Clone IMAGE:5227163 mixed 5' read
W01847.1 Clone IMAGE:298834 lung 5' read
BM016296.1 Clone IMAGE:5418737 mammary gland 5' read
BM564332.1 Clone IMAGE:5484808 blood 5' read P
BM681311.1 Clone UI-E-EJ0-aii-n-19-0-UI eye 3' read A
BM726666.1 Clone UI-E-EJ0-aii-n-19-0-UI eye 5' read
BM977965.1 Clone UI-CF-EC1-aec-d-21-0-UI lung 3' read A
BQ056344.1 Clone IMAGE:5808667 lymph 5' read P
BQ706421.1 Clone IMAGE:6301892 spleen 5' read P
BQ921509.1 Clone IMAGE:6473251 uterus 5' read P
BQ941658.1 Clone IMAGE:6420185 lung 5' read
BU174800.1 Clone IMAGE:6085007 pancreas 5' read P
BU595948.1 Clone IMAGE:6451894 mixed 5' read
AA724706.1 Clone 1342823 parathyroid 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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