> Homeobox C9 (HOXC9)
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UGID:2728141     UniGene Hs.658823     Homo sapiens (human)   HOXC9 Order cDNA clone, Links
Homeobox C9 (HOXC9)

Human protein-coding gene HOXC9. Represented by 49 ESTs from 26 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_006897.1. [UniGene 2728141 - Hs.658823]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_032298.1 Hoxc9 gene product M. musculus 100.0 259
NP_001094377.1 homeobox protein Hox-C9 R. norvegicus 100.0 259
XP_003906522.1 PREDICTED: homeobox protein Hox-C9 isoform 1 P. anubis 100.0 259
XP_001136545.1 PREDICTED: homeobox protein Hox-C9 isoform 2 P. troglodytes 100.0 259
NP_008828.1 HOXC9 gene product H. sapiens 100.0 259
XP_002704290.1 PREDICTED: homeobox protein Hox-C9 B. taurus 100.0 259
XP_004006331.1 PREDICTED: homeobox protein Hox-C9 O. aries 100.0 259
NP_571603.2 hoxc9a gene product D. rerio 80.8 259
NP_001167514.1 homeobox D9 X. laevis 70.0 272
Other hits (2 of 23) [Show all]SpeciesId(%)Len(aa)
XP_003216779.1 PREDICTED: homeobox protein Hox-C9-like A. carolinensis 91.0 255
XP_423451.2 PREDICTED: homeobox protein Hox-C9 G. gallus 89.7 261

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; intestine; connective tissue; testis; lung; skin; cervix; eye; bone; mouth; stomach; uncharacterized tissue; kidney; liver; brain
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.3
UniSTS entry: Chr 12 RH68776 [Map Viewer]
UniSTS entry: Chr 12 SGC35159 [Map Viewer]
UniSTS entry: MARC_44775-44776:1100041323:1
UniSTS entry: Chr 12 Hoxc9
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC053894.1 Homo sapiens homeobox C9, mRNA (cDNA clone MGC:61703 IMAGE:6144625), complete cds PA
AK000445.1 Homo sapiens cDNA FLJ20438 fis, clone KAT04696, highly similar to HXC9_MOUSE HOMEOBOX PROTEIN HOX-C9 PA
BC021265.1 Homo sapiens homeobox C9, mRNA (cDNA clone IMAGE:4580771), **** WARNING: chimeric clone **** PA
AK315194.1 Homo sapiens cDNA, FLJ96178, Homo sapiens homeo box C9 (HOXC9), mRNA PA
BC032769.1 Homo sapiens homeobox C9, mRNA (cDNA clone IMAGE:3877189), partial cds PA
NM_006897.1 Homo sapiens homeobox C9 (HOXC9), mRNA PA

EST sequences (49)

AI085613.1 Clone IMAGE:1678080 mixed 3' read
CB125288.1 Clone L5HLK1s1-3-E04 liver 5' read PA
AI332412.1 Clone IMAGE:1932633 mixed 3' read PA
AI333355.1 Clone IMAGE:1931631 mixed 3' read P
AI361560.1 Clone IMAGE:2014862 brain 3' read P
AI367169.1 Clone IMAGE:1935142 mixed 3' read P
AI382771.1 Clone IMAGE:2063235 mixed 3' read
AI580182.1 Clone IMAGE:2151317 mixed 3' read P
AI671260.1 Clone IMAGE:2310866 uncharacterized tissue 3' read A
AI795981.1 Clone IMAGE:2383263 kidney 3' read P
AI934382.1 Clone IMAGE:2463919 kidney 3' read P
AI949325.1 Clone IMAGE:2471915 stomach 3' read P
AI953122.1 Clone IMAGE:2474722 uncharacterized tissue 3' read A
BE153859.1 mouth
BP245367.1 Clone HKR03151 kidney 5' read P
BP272435.1 Clone KAT04696 stomach 5' read P
BP272542.1 Clone KAT05212 stomach 5' read P
BP272548.1 Clone KAT05273 stomach 5' read P
BP272781.1 Clone KAT06229 stomach 5' read P
BE786221.1 Clone IMAGE:3877189 lung 5' read P
BE786336.1 Clone IMAGE:3877152 lung 5' read P
AA860183.1 Clone IMAGE:1409121 testis 3' read A
BF062661.1 Clone IMAGE:3320665 intestine 3' read
DA984014.1 Clone SYNOV2016608 connective tissue 5' read P
H82729.1 Clone IMAGE:249133 skin 3' read
H83603.1 Clone IMAGE:249133 skin 5' read P
AL522190.3 Clone CS0DB007YD01 uncharacterized tissue 3' read P
AL522191.3 Clone CS0DB007YD01 uncharacterized tissue 5' read P
AL556797.2 Clone CS0DK012YF13 cervix 3' read P
AL556826.3 Clone CS0DK012YF13 cervix 5' read P
N36067.1 Clone IMAGE:270095 skin 5' read P
BG395696.1 Clone IMAGE:4580771 eye 5' read
EL734828.1 mixed 5' read P
BM466700.1 Clone IMAGE:5502990 eye 5' read P
BQ015349.1 Clone IMAGE:5834705 connective tissue 3' read PA
BQ772563.1 Clone UI-H-FE0-bbq-l-05-0-UI bone 3' read PA
BU165512.1 Clone IMAGE:6144625 eye 5' read P
BU625573.1 Clone UI-H-FG1-bgn-j-05-0-UI bone 3' read PA
BU621618.1 Clone UI-H-FL1-bga-j-03-0-UI bone 3' read PA
BU633502.1 Clone UI-H-FL1-bgu-n-02-0-UI bone 3' read A
BU616567.1 Clone UI-H-FH1-bfi-h-18-0-UI bone 3' read PA
AA227529.1 Clone IMAGE:667494 mixed 5' read P
AA227902.1 Clone IMAGE:667477 mixed 3' read
AA227856.1 Clone IMAGE:667494 mixed 3' read A
HY055721.1 Clone H04D197D14 testis P
CA411875.1 Clone UI-H-EZ0-bak-g-08-0-UI bone 3' read PA
CA429963.1 Clone UI-H-FH1-bfp-p-19-0-UI bone 3' read PA
CA446202.1 Clone UI-H-ED1-axq-n-20-0-UI connective tissue 3' read PA
AA719162.1 Clone 1292666 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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