> AlkB, alkylation repair homolog 4 (E. coli) (ALKBH4)
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UGID:2727916     UniGene Hs.658598     Homo sapiens (human)   ALKBH4 Order cDNA clone, Links
AlkB, alkylation repair homolog 4 (E. coli) (ALKBH4)

Human protein-coding gene ALKBH4. Represented by 92 ESTs from 69 cDNA libraries. Corresponds to reference sequence NM_017621.3. [UniGene 2727916 - Hs.658598]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060091.1 ALKBH4 gene product H. sapiens 100.0 301
XP_003318746.1 PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4 P. troglodytes 99.7 301
NP_082346.1 Alkbh4 gene product M. musculus 85.6 214
NP_001084791.1 alkB, alkylation repair homolog 4 X. laevis 60.7 304
XP_687075.1 PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4 D. rerio 59.3 262
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001108804.1 PREDICTED: alkylated DNA repair protein alkB homolog 4-like isoform 2 M. mulatta 99.0 301
XP_003895885.1 PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH4 P. anubis 99.0 301

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; prostate; spleen; kidney; adipose tissue; muscle; eye; bone marrow; mouth; testis; uterus; liver; intestine; thymus; stomach; ascites; mammary gland; lymph; uncharacterized tissue; skin; mixed; blood; placenta; embryonic tissue; lung; nerve; pituitary gland; bladder; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 7
Map position: 7q22.1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK000020.1 Homo sapiens cDNA FLJ20013 fis, clone ADKA03455 PA
NM_017621.3 Homo sapiens alkB, alkylation repair homolog 4 (E. coli) (ALKBH4), mRNA PA
AK222689.1 Homo sapiens mRNA for hypothetical protein FLJ20013 variant, clone: CBR05887 P
AK026097.1 Homo sapiens cDNA: FLJ22444 fis, clone HRC09425 PA
BC002820.2 Homo sapiens alkB, alkylation repair homolog 4 (E. coli), mRNA (cDNA clone MGC:3464 IMAGE:3636984), complete cds PA
BC017096.1 Homo sapiens alkB, alkylation repair homolog 4 (E. coli), mRNA (cDNA clone MGC:12618 IMAGE:2820440), complete cds PA

EST sequences (92)

BX387550.2 Clone CS0DC025YI21 uncharacterized tissue 5' read P
BX340913.2 Clone CS0DJ009YM02 blood 5' read P
BX348523.2 Clone CS0DJ009YM02 blood 5' read
BX348524.2 Clone CS0DJ009YM02 blood 5' read
BX353099.2 Clone CS0DB009YD18 uncharacterized tissue 5' read P
CD244757.1 Clone IMAGE:30376677 brain 5' read P
CD245837.1 Clone IMAGE:30374865 brain 5' read P
CD513453.1 Clone IMAGE:30394719 pituitary gland 5' read P
AL121411.1 Clone DKFZp762G217 skin 5' read
CF453966.1 Clone IMAGE:30513443 nerve 5' read P
AW247398.1 Clone IMAGE:2820440 lung 5' read
CN427052.1 embryonic tissue 5' read
CN427051.1 embryonic tissue 5' read A
CV026293.1 mixed 5' read P
BP213095.1 Clone CBR05887 brain 5' read P
BP255588.1 Clone HRC09425 kidney 5' read P
BP255668.1 Clone HRC09622 kidney 5' read P
BP255671.1 Clone HRC09625 kidney 5' read P
BP264849.1 Clone HbmA200039 muscle 5' read P
BP307387.1 Clone NRB01086 brain 5' read P
BP375717.1 Clone WMC01483 uterus 5' read P
BP381675.1 Clone adKA03455 adipose tissue 5' read P
BE384853.1 Clone IMAGE:3617506 skin 5' read P
BE410070.1 Clone IMAGE:3636984 placenta 5' read P
BE620519.1 Clone IMAGE:3886242 lung 5' read
DN601669.1 Clone IMAGE:7482332 embryonic tissue 5' read P
DR007150.1 Clone TC114052 spleen 5' read P
BE856121.1 Clone IMAGE:3304048 prostate 3' read A
CR987345.1 Clone RZPDp9017E2226 uncharacterized tissue 5' read P
CR991325.1 Clone RZPDp9016B2319 uncharacterized tissue 5' read P
BF316159.1 Clone IMAGE:4125470 brain 5' read P
BF316187.1 Clone IMAGE:4125430 brain 5' read P
DA348216.1 Clone BRSSN2009954 brain 5' read P
DA093806.1 Clone BRACE3002827 brain 5' read P
DA178074.1 Clone BRAMY2042100 brain 5' read P
DA002424.1 Clone 3NB692002797 uncharacterized tissue 5' read P
BF725595.1 Clone bx18d01 eye 3' read A
BF725596.1 Clone bx18d01 eye 5' read P
DA266941.1 Clone BRCAN2020491 brain 5' read P
DA481416.1 Clone ERLTF2000406 bone marrow 5' read P
DA674330.1 Clone NETRP2005073 blood 5' read P
DA908628.1 Clone SKNSH2000884 brain 5' read P
DA764637.1 Clone NTONG2005234 mouth 5' read P
DB035555.1 Clone TESTI2020964 testis 5' read P
DA729454.1 Clone NT2RM2003223 testis 5' read P
DA709964.1 Clone NT2RI2015333 5' read P
DB000938.1 Clone TBAES2002738 mammary gland 5' read P
DB310897.1 Clone BRTHA2001156 brain 3' read A
DB121705.1 Clone THYMU2030425 thymus 5' read P
DB451781.1 Clone H013054N23 testis 5' read P
BG499127.1 Clone IMAGE:4668033 prostate 5' read P
BG748277.1 Clone IMAGE:4843108 eye 5' read P
BI087608.1 Clone IMAGE:4993683 placenta 5' read
BI010242.1 uncharacterized tissue
EL949189.1 eye 5' read
BI818567.1 Clone IMAGE:5174086 mixed 5' read P
BI871315.1 Clone IMAGE:5403008 liver 5' read P
BI916383.1 Clone IMAGE:5242328 brain 5' read
BM083633.1 Clone IMAGE:4668033 prostate 5' read P
BM457449.1 Clone IMAGE:5584931 uncharacterized tissue 5' read P
BM466722.1 Clone IMAGE:5503006 eye 5' read P
BM467027.1 Clone IMAGE:5572928 intestine 5' read P
BM746235.1 Clone S7SNU719-20-E09 stomach 5' read
BM752761.1 Clone S3SNU16-21-H10 ascites 5' read P
BM764940.1 Clone S3SNU16s1-12-D01 ascites 5' read P
BM766100.1 Clone S7SNU719s1-11-G06 stomach 5' read
BM770478.1 Clone S7SNU719s1-14-F03 stomach 5' read
BQ056123.1 Clone IMAGE:5808409 lymph 5' read
BQ056173.1 Clone IMAGE:5808464 lymph 5' read
BQ058053.1 Clone IMAGE:5813843 lymph 5' read P
BQ058749.1 Clone IMAGE:5814668 lymph 5' read
BQ059031.1 Clone IMAGE:5815007 lymph 5' read P
BQ061858.1 Clone IMAGE:5921357 lymph 5' read P
BQ062719.1 Clone IMAGE:5924236 lymph 5' read
BQ063043.1 Clone IMAGE:5924612 lymph 5' read P
BQ065255.1 Clone IMAGE:5929772 lymph 5' read P
BQ082221.1 Clone S22SNU16n1-21-F10 ascites 5' read
BQ226513.1 Clone IMAGE:6070100 uncharacterized tissue 5' read P
BQ300678.1 bladder
BQ425330.1 Clone IMAGE:6156736 uterus 5' read P
BQ432971.1 Clone IMAGE:6047589 skin 5' read
BQ898813.1 Clone IMAGE:6304323 lymph 5' read P
BQ919302.1 Clone IMAGE:6382186 prostate 5' read P
BQ959688.1 Clone IMAGE:6470623 uterus 5' read P
BU541234.1 Clone IMAGE:6572864 prostate 5' read P
BU526881.1 Clone IMAGE:6536614 lung 5' read P
BU857598.1 Clone IMAGE:6647465 mammary gland 5' read P
HY010725.1 Clone H04D037E09 testis P
CA420615.1 Clone UI-H-FG0-bcq-e-03-0-UI bone 3' read A
AA522500.1 Clone IMAGE:979084 lung 3' read
AA587078.1 Clone IMAGE:1089939 intestine 3' read
AA676875.1 Clone IMAGE:897103 brain 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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