> Ring finger protein 180 (RNF180)
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UGID:2727161     UniGene Hs.657843     Homo sapiens (human)   RNF180 Order cDNA clone, Links
Ring finger protein 180 (RNF180)

Human protein-coding gene RNF180. Represented by 49 ESTs from 28 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 2727161 - Hs.657843]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001107033.1 RNF180 gene product H. sapiens 100.0 591
NP_082210.1 Rnf180 gene product M. musculus 84.4 527
XP_690838.4 PREDICTED: e3 ubiquitin-protein ligase RNF180 D. rerio 67.1 210
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_527201.4 PREDICTED: E3 ubiquitin-protein ligase RNF180 P. troglodytes 98.8 415
XP_001086692.2 PREDICTED: RING finger protein 180-like M. mulatta 98.0 591

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; adipose tissue; mixed; lung; parathyroid; vascular; embryonic tissue; eye; spleen; connective tissue; uterus; pancreas; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 5
Map position: 5q12.3
UniSTS entry: Chr 5 WI-14912 [Map Viewer]
UniSTS entry: Chr 5 SHGC-30782 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

NM_178532.3 Homo sapiens ring finger protein 180 (RNF180), transcript variant 2, mRNA P
BC101277.2 Homo sapiens ring finger protein 180, mRNA (cDNA clone MGC:120325 IMAGE:40024386), complete cds P
BC101279.1 Homo sapiens ring finger protein 180, mRNA (cDNA clone IMAGE:40024391), complete cds P
BC101278.2 Homo sapiens ring finger protein 180, mRNA (cDNA clone MGC:120326 IMAGE:40024390), complete cds P
BC101397.2 Homo sapiens ring finger protein 180, mRNA (cDNA clone MGC:120328 IMAGE:40024392), complete cds P
NM_001113561.1 Homo sapiens ring finger protein 180 (RNF180), transcript variant 1, mRNA PA
AK090756.1 Homo sapiens cDNA FLJ33437 fis, clone BRACE2021541, weakly similar to PROTEIN-TYROSINE PHOSPHATASE YVH1 (EC 3.1.3.48) P
AL832580.2 Homo sapiens mRNA; cDNA DKFZp451F1716 (from clone DKFZp451F1716) PA

EST sequences (49)

BX110372.1 Clone IMAGp998H22278_;_IMAGE:48662 brain P
AI167804.1 Clone IMAGE:1682614 parathyroid 3' read A
BX113020.1 Clone IMAGp998F16728_;_IMAGE:321807 parathyroid
AI216189.1 Clone IMAGE:1884435 lung 3' read A
AI273646.1 Clone IMAGE:1876834 mixed 3' read P
AI431828.1 Clone IMAGE:2131535 kidney 3' read A
AI521986.1 Clone IMAGE:2138257 kidney 3' read A
CB267379.1 adipose tissue 5' read
CB999963.1 Clone IMAGE:30324655 mixed 5' read
CD356775.1 Clone IMAGE:30401540 vascular 5' read
CD356815.1 Clone IMAGE:30404787 vascular 5' read
CK826570.1 Clone IMAGE: pancreas 3' read P
BU101869.1 mixed P
BU101870.1 mixed P
H05502.1 Clone IMAGE:43412 brain 3' read A
CN359872.1 embryonic tissue 5' read
CN430267.1 embryonic tissue 5' read
H12917.1 Clone IMAGE:43412 brain 5' read P
H14987.1 Clone IMAGE:48662 brain 5' read P
H14988.1 Clone IMAGE:48662 brain 3' read A
BE218282.1 Clone IMAGE:3175515 lung 3' read A
BE222198.1 Clone IMAGE:3166066 lung 3' read A
CR740297.1 Clone IMAGp998B234272_;_IMAGE:1682614 parathyroid 5' read
H37757.1 Clone IMAGE:190443 eye 3' read A
BE672684.1 Clone IMAGE:3233683 lung 3' read A
DN998177.1 Clone TC107252 mammary gland 5' read P
DR003189.1 Clone TC106115 brain 5' read P
BF115015.1 Clone IMAGE:3134087 kidney 3' read A
DA163418.1 Clone BRAMY2024035 brain 5' read P
DA070879.1 Clone BRACE2021541 brain 5' read P
DA183707.1 Clone BRAMY3001654 brain 5' read P
DA569842.1 Clone HEMBA1003633 embryonic tissue 5' read P
DA960005.1 Clone SPLEN2040263 spleen 5' read P
BF433928.1 Clone IMAGE:3702355 lung 3' read
DA809479.1 Clone OCBBF3025728 brain 5' read P
DA711691.1 Clone NT2RI2017611 5' read P
DT220926.1 brain
BG218201.1 connective tissue
BI006702.1 kidney P
W33182.1 Clone IMAGE:321807 parathyroid 3' read A
W37247.1 Clone IMAGE:321807 parathyroid 5' read
BM718923.1 Clone UI-E-EO1-ajc-h-12-0-UI eye 5' read P
BM728889.1 Clone UI-E-EO1-aiv-b-16-0-UI eye 5' read
AA035197.1 Clone IMAGE:471808 uterus 5' read P
AA035198.1 Clone IMAGE:471808 uterus 3' read P
AA040069.1 Clone IMAGE:485871 uterus 3' read A
FN142269.1 Clone 225333_1295_2819
CA949425.1 Clone IMAGE: pancreas 3' read A
CA949684.1 Clone IMAGE: pancreas 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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