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UGID:2726075     UniGene Hs.656757     Homo sapiens (human)   CCDC96
Coiled-coil domain containing 96 (CCDC96)

Human protein-coding gene CCDC96. Represented by 51 ESTs from 16 cDNA libraries. Corresponds to reference sequence NM_153376.2. [UniGene 2726075 - Hs.656757]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_699207.1 coiled-coil domain-containing protein 96 H. sapiens 100.0 554
NP_080001.1 Ccdc96 gene product M. musculus 73.0 580
NP_001122170.1 zgc:194851 gene product D. rerio 58.8 148
Other hits (2 of 14) [Show all]SpeciesId(%)Len(aa)
XP_526515.2 PREDICTED: coiled-coil domain-containing protein 96 P. troglodytes 98.2 556
XP_002804051.1 PREDICTED: coiled-coil domain-containing protein 96-like, partial M. mulatta 93.3 548

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; uncharacterized tissue; brain; uterus; eye; pancreas; mixed; placenta; kidney; connective tissue; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 4
Map position: 4p16.1
UniSTS entry: Chr 4 RH36525
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

BC105055.1 Homo sapiens coiled-coil domain containing 96, mRNA (cDNA clone MGC:132715 IMAGE:8144058), complete cds P
BC112274.1 Homo sapiens coiled-coil domain containing 96, mRNA (cDNA clone MGC:138479 IMAGE:8327742), complete cds P
AK075056.1 Homo sapiens cDNA FLJ90575 fis, clone OVARC1001952, weakly similar to TRICHOHYALIN P
NM_153376.2 Homo sapiens coiled-coil domain containing 96 (CCDC96), mRNA PA

EST sequences (51)

R24472.1 Clone IMAGE:132981 placenta 3' read
BX091584.1 Clone IMAGp998J22186_;_IMAGE:132981 placenta A
AI352352.1 Clone IMAGE:1948178 uncharacterized tissue 3' read A
AI453089.1 Clone IMAGE:2145148 mixed 3' read A
AI609755.1 Clone IMAGE:2105811 brain 3' read P
AI828177.1 Clone IMAGE:2421788 pancreas 3' read A
AI862332.1 Clone IMAGE:2281616 uterus 3' read PA
AW449605.1 Clone IMAGE:2735794 uncharacterized tissue 3' read A
CK300202.1 Clone UI-E-EJ1-ajx-m-11-0-UI eye 3' read A
BU101619.1 mixed
BU101620.1 mixed P
BE504875.1 Clone IMAGE:3209826 uncharacterized tissue 3' read PA
BE550360.1 Clone IMAGE:3219481 uncharacterized tissue 3' read A
DB040785.1 Clone TESTI2027678 testis 5' read P
DB035059.1 Clone TESTI2020329 testis 5' read P
DA812670.1 Clone OVARC1001952 ovary 5' read P
DB045256.1 Clone TESTI2033445 testis 5' read P
DB048440.1 Clone TESTI2037467 testis 5' read P
DB049304.1 Clone TESTI2038583 testis 5' read P
DB031451.1 Clone TESTI2015463 testis 5' read P
DB032758.1 Clone TESTI2017288 testis 5' read P
DB027059.1 Clone TESTI2009440 testis 5' read P
DB338072.1 Clone TESTI2031932 testis 3' read PA
DB051668.1 Clone TESTI2041637 testis 5' read P
DB051967.1 Clone TESTI2042030 testis 5' read P
DB173574.1 Clone TKIDN2009176 kidney 5' read P
DB057576.1 Clone TESTI2049803 testis 5' read P
DB545591.1 Clone H023073F24 brain 3' read
DB531897.1 Clone H023015P22 brain 3' read A
DB519558.1 Clone H013064F10 testis 3' read PA
DB551687.1 Clone H023095D06 brain 3' read A
DB473593.1 Clone H023060D22 brain 5' read
DB454119.1 Clone H013064F10 testis 5' read P
DB542368.1 Clone H023060D22 brain 3' read
DB476890.1 Clone H023073F24 brain 5' read
BQ009685.1 Clone IMAGE:5835439 connective tissue 3' read PA
BQ015371.1 Clone IMAGE:5834778 connective tissue 3' read PA
BQ188733.1 Clone UI-E-EJ1-ajx-m-11-0-UI eye 5' read A
HY018392.1 Clone H04D062G09 testis P
HY030448.1 Clone H04D105K10 testis P
HY031309.1 Clone H04D108H21 testis P
HY032957.1 Clone H04D113O16 testis P
HY041892.1 Clone H04D147K19 testis P
HY187905.1 Clone H04D015D22 testis P
HY201635.1 Clone H04D062G09 testis P
HY212589.1 Clone H04D097J20 testis
HY215077.1 Clone H04D105K10 testis P
HY215874.1 Clone H04D108H21 testis P
HY217598.1 Clone H04D113O16 testis P
HY228469.1 Clone H04D147K19 testis P
HY228704.1 Clone H04D148H06 testis P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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