> HNF1 homeobox A (HNF1A)
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UGID:2723773     UniGene Hs.654455     Homo sapiens (human)   HNF1A Order cDNA clone, Links
HNF1 homeobox A (HNF1A)

Human protein-coding gene HNF1A. Represented by 16 ESTs from 12 cDNA libraries. Corresponds to reference sequence NM_000545.5. [UniGene 2723773 - Hs.654455]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_000536.5 HNF1A gene product H. sapiens 100.0 630
XP_001148554.2 PREDICTED: hepatocyte nuclear factor 1-alpha, partial P. troglodytes 100.0 319
XP_003907324.1 PREDICTED: hepatocyte nuclear factor 1-alpha-like, partial P. anubis 99.6 521
NP_033353.2 Hnf1a gene product M. musculus 96.7 627
NP_001095214.1 hepatocyte nuclear factor 1-alpha-A X. laevis 69.3 604
NP_739570.1 hnf1a gene product D. rerio 58.3 546
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
NP_001027560.1 HNF1A gene product S. scrofa 97.9 630
XP_543429.2 PREDICTED: hepatocyte nuclear factor 1-alpha isoform 1 C. lupus familiaris 97.8 630

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; liver; intestine; kidney; eye; ascites; stomach; mixed
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q24.2
UniSTS entry: Chr 12 G15717
UniSTS entry: Chr 12 D12S2088 [Map Viewer]
UniSTS entry: Chr 12 TCF1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (27)

NM_000545.5 Homo sapiens HNF1 homeobox A (HNF1A), mRNA P
M57732.1 Human hepatic nuclear factor 1 (TCF1) mRNA, complete cds, clones HCL10, HCL12, HCL17, and HCL20 P
BC104910.1 Homo sapiens HNF1 homeobox A, mRNA (cDNA clone MGC:132570 IMAGE:8143913), complete cds P
BC104908.1 Homo sapiens HNF1 homeobox A, mRNA (cDNA clone MGC:132568 IMAGE:8143911), complete cds P
AK298422.1 Homo sapiens cDNA FLJ56500 complete cds, highly similar to Hepatocyte nuclear factor 1-alpha P
BC143483.1 Homo sapiens cDNA clone IMAGE:9051991 P
HM449089.1 Homo sapiens HNF1A homeobox A delta 2 (HNF1A) mRNA, complete cds P
HM449088.1 Homo sapiens HNF1A homeobox A insIVS8 (HNF1A) mRNA, complete cds P
HM116563.1 Homo sapiens HNF1 alpha B splice variant 5 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116562.1 Homo sapiens HNF1 alpha B splice variant 7 (HNF1A) mRNA, partial sequence
HM116561.1 Homo sapiens HNF1 alpha B splice variant 6 (HNF1A) mRNA, complete cds, alternatively spliced
HM116560.1 Homo sapiens HNF1 alpha B splice variant 4 (HNF1A) mRNA, complete sequence P
HM116559.1 Homo sapiens HNF1 alpha B splice variant 3 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116558.1 Homo sapiens HNF1 alpha B splice variant 2 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116557.1 Homo sapiens HNF1 alpha B splice variant 1 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116552.1 Homo sapiens HNF1 alpha C splice variant 1 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116551.1 Homo sapiens HNF1 alpha A splice variant 11 (HNF1A) mRNA, partial sequence
HM116550.1 Homo sapiens HNF1 alpha A splice variant 10 (HNF1A) mRNA, partial sequence
HM116549.1 Homo sapiens HNF1 alpha A splice variant 8 (HNF1A) mRNA, partial sequence P
HM116548.1 Homo sapiens HNF1 alpha A splice variant 8 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116547.1 Homo sapiens HNF1 alpha A splice variant 7 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116546.1 Homo sapiens HNF1 alpha A splice variant 6 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116545.1 Homo sapiens HNF1 alpha A splice variant 5 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116544.1 Homo sapiens HNF1 alpha A splice variant 4 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116543.1 Homo sapiens HNF1 alpha A splice variant 3 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116542.1 Homo sapiens HNF1 alpha A splice variant 2 (HNF1A) mRNA, complete cds, alternatively spliced P
HM116541.1 Homo sapiens HNF1 alpha A splice variant 1 (HNF1A) mRNA, complete cds, alternatively spliced P

EST sequences (16)

AA887705.1 Clone IMAGE:1160241 intestine 3' read
BX371406.2 Clone CS0DC010YP21 uncharacterized tissue 3' read
BX390180.2 Clone CS0DC010YP21 uncharacterized tissue 5' read
AW294801.1 Clone IMAGE:2726794 uncharacterized tissue 3' read A
BE348240.1 Clone IMAGE:3183535 kidney 3' read
BE870222.1 Clone IMAGE:3854003 intestine 5' read
AL524668.3 Clone CS0DC010YP21 uncharacterized tissue 5' read P
AL562376.3 Clone CS0DC010YP21 uncharacterized tissue 3' read
DC362764.1 Clone LIVER2003726 liver 5' read P
BM724029.1 Clone UI-E-EO1-aiy-i-19-0-UI eye 5' read
BM741129.1 Clone S6SNU620-3-F08 ascites 5' read
BM854591.1 Clone S21SNU520-65-A09 stomach 5' read
BQ643620.1 Clone IMAGE:6269147 liver 5' read P
BQ652046.1 Clone IMAGE:6287163 liver 5' read
GD256506.1 Clone da0_000634 5' read
R07823.1 Clone IMAGE:126930 mixed 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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