> MutS homolog 5 (E. coli) (MSH5)
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UGID:2477635     UniGene Hs.647011     Homo sapiens (human)   MSH5 Order cDNA clone, Links
MutS homolog 5 (E. coli) (MSH5)

Human protein-coding gene MSH5. Represented by 200 ESTs from 105 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 2477635 - Hs.647011]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_751897.1 MSH5 gene product H. sapiens 100.0 834
XP_001158290.1 PREDICTED: mutS protein homolog 5 isoform 3 P. troglodytes 99.6 833
NP_038628.2 Msh5 gene product M. musculus 92.4 828
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_003897403.1 PREDICTED: mutS protein homolog 5 isoform 1 P. anubis 98.9 833
XP_001105745.1 PREDICTED: mutS protein homolog 5-like isoform 1 M. mulatta 98.8 833

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; uncharacterized tissue; spleen; blood; esophagus; thymus; intestine; embryonic tissue; pituitary gland; liver; prostate; stomach; lymph; uterus; mixed; ovary; pancreas; mouth; lung; skin; kidney; brain; cervix; placenta; muscle; trachea; epididymis; tonsil; salivary gland; ascites; lymph node; eye; parathyroid; bone; bone marrow; mammary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6p21.3
UniSTS entry: MARC_21497-21498:1032976101:1
UniSTS entry: Chr 6 RH103527
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

AF048986.1 Homo sapiens MutS homolog 5 (MSH5) mRNA, complete cds PA
AF070071.1 Homo sapiens MutS homolog (MSH5) mRNA, complete cds PA
BT007200.1 Homo sapiens mutS homolog 5 (E. coli) mRNA, complete cds P
NM_002441.4 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 3, mRNA PA
BC002498.2 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:2939 IMAGE:3050903), complete cds PA
BC001358.2 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:2043 IMAGE:3050865), complete cds PA
NM_025259.5 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 1, mRNA PA
AK304221.1 Homo sapiens cDNA FLJ58885 complete cds, highly similar to MutS protein homolog 5 P
AK303129.1 Homo sapiens cDNA FLJ54211 complete cds, highly similar to MutS protein homolog 5 P
NR_037846.1 Homo sapiens MSH5-SAPCD1 readthrough (non-protein coding) (MSH5-SAPCD1), non-coding RNA PA
BC041031.1 Homo sapiens mutS homolog 5 (E. coli), mRNA (cDNA clone MGC:52249 IMAGE:4591368), complete cds PA
NM_172166.3 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 4, mRNA PA
NM_172165.3 Homo sapiens mutS homolog 5 (E. coli) (MSH5), transcript variant 2, mRNA PA
AF034759.1 Homo sapiens MutS homolog (MSH5) mRNA, complete cds P

EST sequences (200)

AA969618.1 Clone IMAGE:1579151 mixed 3' read A
AA969902.1 Clone IMAGE:1581142 mixed 3' read P
AI027803.1 Clone IMAGE:1646258 parathyroid 3' read A
BX093796.1 Clone IMAGp998H034177_;_IMAGE:1646258 parathyroid P
AI261444.1 Clone IMAGE:1868397 kidney 3' read A
CB155199.1 Clone B2N807043-13-D07 brain 5' read P
CB132057.1 Clone L12JSHC0-3-A09 liver 5' read P
AI243848.1 Clone IMAGE:1854188 mixed 3' read A
AI247196.1 Clone IMAGE:1998782 stomach 3' read A
AI383438.1 Clone IMAGE:2087452 mixed 3' read PA
AI423859.1 Clone IMAGE:2110769 mixed 3' read A
AI446690.1 Clone IMAGE:2141251 stomach 3' read A
AI468918.1 Clone IMAGE:2133312 lymph node 3' read A
AI689186.1 Clone IMAGE:2268949 uterus 3' read A
AI796035.1 Clone IMAGE:2383342 kidney 3' read A
AI799714.1 Clone IMAGE:2164432 brain 3' read PA
AI802130.1 Clone IMAGE:2271053 lung 3' read PA
AL046207.1 Clone DKFZp434D187 testis 5' read P
AI885686.1 Clone IMAGE:2429283 brain 3' read PA
CB960398.1 Clone IMAGE:30342344 placenta 5' read P
BX431684.2 Clone CS0DG005YG02 uncharacterized tissue 5' read P
BX421341.2 Clone CS0DG005YG02 uncharacterized tissue 5' read P
CD242818.1 Clone IMAGE:30383743 pituitary gland 5' read P
BX455858.2 Clone CS0DG005YG02 uncharacterized tissue 3' read P
AW024700.1 Clone IMAGE:2525226 kidney 3' read A
BX481738.1 Clone DKFZp686H18227 muscle 5' read P
AW029573.1 Clone IMAGE:2543570 stomach 3' read PA
BX646154.1 Clone DKFZp781K1760 uncharacterized tissue 5' read P
BX646602.1 Clone DKFZp781C0490 uncharacterized tissue 5' read P
AW269459.1 Clone IMAGE:2816826 lung 3' read PA
AW351949.1 mouth
AW351953.1 mouth
AW366491.1 mouth P
CD632617.1 uncharacterized tissue P
CD632618.1 uncharacterized tissue P
AW594259.1 Clone IMAGE:2949681 uncharacterized tissue 3' read PA
AW630322.1 Clone IMAGE:2970270 mixed 3' read
AW631108.1 Clone IMAGE:2970270 mixed 5' read
AW651697.1 Clone IMAGE:2901136 cervix 5' read P
AW673158.1 Clone IMAGE:2901136 cervix 3' read PA
CK818444.1 Clone IMAGE: pancreas 3' read P
CK818445.1 Clone IMAGE: pancreas 5' read PA
CN481532.1 Clone hw08h09 eye 5' read P
AW949087.1 prostate P
AW949094.1 prostate P
AW949095.1 prostate P
CN361453.1 embryonic tissue 5' read P
CN361448.1 embryonic tissue 5' read P
CN361449.1 embryonic tissue 5' read P
CN361450.1 embryonic tissue 5' read P
CN361451.1 embryonic tissue 5' read P
CN361452.1 embryonic tissue 5' read P
CN361454.1 embryonic tissue 5' read P
AW969291.1 uncharacterized tissue P
AW969486.1 uncharacterized tissue P
CV028282.1 mixed 5' read P
BE269902.1 Clone IMAGE:3544554 lymph 5' read P
BE276767.1 Clone IMAGE:3050865 skin 5' read P
BE292800.1 Clone IMAGE:2987794 intestine 5' read P
BE298343.1 Clone IMAGE:3028386 muscle 5' read P
BE295918.1 Clone IMAGE:3530346 muscle 5' read P
BE410880.1 Clone IMAGE:3635252 placenta 5' read
CV806953.1 Clone IMAGE:7502663 embryonic tissue 5' read P
BE551579.1 Clone IMAGE:3195817 uncharacterized tissue 3' read PA
CX167167.1 Clone IMAGE:7471099 embryonic tissue 5' read P
BE676478.1 Clone IMAGE:3296198 uncharacterized tissue 3' read PA
BE706421.1 mouth
BE768361.1 prostate
DR002130.1 Clone TC109454 brain 5' read P
BP422854.1 Clone HIE06292r intestine 3' read
BF095223.1 uterus
BF115965.1 Clone IMAGE:3570467 ovary 3' read PA
BF116106.1 Clone IMAGE:3570579 ovary 3' read PA
BF222767.1 Clone IMAGE:3649806 prostate 3' read PA
H59944.1 Clone IMAGE:205429 mixed 5' read
H60641.1 Clone IMAGE:205134 mixed 5' read
DA314581.1 Clone BRHIP3004613 brain 5' read P
DA475053.1 Clone DFNES2003645 skin 5' read P
DA637081.1 Clone LIVER1000301 liver 5' read P
DA448836.1 Clone CTONG2020539 mouth 5' read P
DA644386.1 Clone LYMPB2001269 blood 5' read P
DA921477.1 Clone SMINT2007175 intestine 5' read
DA955249.1 Clone SPLEN2033817 spleen 5' read P
DA877958.1 Clone PROST2016584 prostate 5' read PA
DA792996.1 Clone OCBBF2032765 brain 5' read P
DB017554.1 Clone TESOP2007120 esophagus 5' read P
DB026108.1 Clone TESTI2008188 testis 5' read P
DB146799.1 Clone THYMU3022161 thymus 5' read P
DB081252.1 Clone TESTI4027154 testis 5' read P
DB114785.1 Clone THYMU2020195 thymus 5' read P
DB160279.1 Clone THYMU3040361 thymus 5' read P
DB162521.1 Clone THYMU3043488 thymus 5' read P
DB162923.1 Clone THYMU3044034 thymus 5' read P
DB090977.1 Clone TESTI4040142 testis 5' read P
DB274678.1 Clone UTERU2037826 uterus 5' read P
DB275730.1 Clone UTERU3000860 uterus 5' read P
DB282288.1 Clone UTERU3009483 uterus 5' read P
DB237672.1 Clone TRACH3033415 trachea 5' read P
DB132430.1 Clone THYMU3002409 thymus 5' read P
DB277852.1 Clone UTERU3003663 uterus 5' read P
DB238921.1 Clone TRACH3034990 trachea 5' read P
DB246177.1 Clone TUTER2002385 uterus 5' read P
DB063878.1 Clone TESTI4004475 testis 5' read P
DB063896.1 Clone TESTI4004499 testis 5' read P
BF757389.1 intestine
DB333374.1 Clone SPLEN2018732 spleen 3' read PA
BF768965.1 epididymis P
BF974166.1 Clone IMAGE:4335116 tonsil 5' read P
BF931645.1 brain
DB442942.1 Clone H013007D16 testis 5' read P
DB447422.1 Clone H013030K04 testis 5' read P
DB448226.1 Clone H013035K07 testis 5' read
DB507885.1 Clone H013007D16 testis 3' read A
DB450223.1 Clone H013047M09 testis 5' read P
DB512395.1 Clone H013030K04 testis 3' read A
DB512525.1 Clone H013031G24 testis 3' read A
DB513367.1 Clone H013035K07 testis 3' read A
DB514904.1 Clone H013043J11 testis 3' read PA
DB515832.1 Clone H013047M09 testis 3' read A
BG424936.1 Clone IMAGE:4591368 kidney 5' read P
BG436622.1 Clone IMAGE:4621058 lung 5' read P
BG436814.1 Clone IMAGE:4620973 lung 5' read P
BG527867.1 Clone IMAGE:4685479 salivary gland 5' read P
BG615049.1 Clone IMAGE:4775096 testis 5' read P
BI062337.1 uterus
BI062720.1 uterus
BI062976.1 uterus P
BI063220.1 uterus P
BI063399.1 uterus P
BG952523.1 intestine
BG952525.1 intestine
EL736021.1 mixed 5' read P
BG719397.1 Clone IMAGE:4822274 testis 5' read P
BJ994234.1 Clone hmfn-2893 liver 5' read P
BJ994235.1 Clone hmfn-2893 liver 3' read
AL597108.1 Clone DKFZp313G1611 uncharacterized tissue 5' read P
DC353954.1 Clone FEBRA2024716 brain 5' read P
DC408142.1 Clone THYMU3008470 thymus 5' read P
DC358832.1 Clone HLUNG2009914 lung 5' read P
BI438852.1 pancreas 3' read PA
BI439178.1 pancreas 5' read P
DC417061.1 Clone TRACH3018529 trachea 5' read P
DC405458.1 Clone THYMU2012727 thymus 5' read P
DC388047.1 Clone SMINT2008219 intestine 5' read P
BI768461.1 Clone IMAGE:5203808 mixed 5' read P
CU444428.1 skin P
BM454653.1 Clone IMAGE:5583117 uncharacterized tissue 5' read P
BM457407.1 Clone IMAGE:5584877 uncharacterized tissue 5' read P
BM468051.1 Clone IMAGE:5577938 skin 5' read P
BM756506.1 Clone S2SNU668-21-C10 ascites 5' read
BM756528.1 Clone S2SNU668-21-E09 ascites 5' read P
BM781979.1 Clone S13KMS5s1-8-F10 stomach 5' read P
BM781995.1 Clone S13KMS5s1-8-H06 stomach 5' read P
BQ319535.1 intestine
BQ319536.1 intestine
BQ433482.1 Clone IMAGE:6044934 uncharacterized tissue 5' read P
BQ686901.1 Clone IMAGE:6252095 pancreas 5' read P
BM146651.1 Clone TCAAP6641 bone marrow
BM152095.1 Clone TCBAP2892 lymph node
BU185936.1 Clone IMAGE:6083129 pancreas 5' read P
AA135366.1 Clone IMAGE:588149 intestine 5' read
BU626162.1 Clone UI-H-FG1-bgq-m-18-0-UI bone 3' read PA
BU783156.1 Clone IMAGE:6123504 pancreas 3' read PA
BU783404.1 Clone IMAGE:6123504 pancreas 5' read P
BU849072.1 Clone IMAGE:6597356 ovary 5' read P
BU950346.1 Clone IMAGE:6132742 pancreas 3' read PA
BU950645.1 Clone IMAGE:6132742 pancreas 5' read P
BU951004.1 Clone IMAGE:6132235 pancreas 5' read P
HY010391.1 Clone H04D036D02 testis P
HY025980.1 Clone H04D088L23 testis P
HY039936.1 Clone H04D139L09 testis P
HY040304.1 Clone H04D141A12 testis P
HY041016.1 Clone H04D143P13 testis P
HY046024.1 Clone H04D161A15 testis P
HY055852.1 Clone H04D197L11 testis P
HY194582.1 Clone H04D036D02 testis
HY201440.1 Clone H04D061M19 testis
HY209799.1 Clone H04D088L23 testis P
HY225966.1 Clone H04D139L09 testis P
HY226374.1 Clone H04D141A12 testis P
HY227385.1 Clone H04D143P13 testis P
HY232351.1 Clone H04D161A15 testis P
HY244017.1 Clone H04D197L11 testis P
CA394021.1 Clone cs46b09 eye 5' read P
CA427196.1 Clone UI-H-DF0-bey-l-02-0-UI bone 3' read PA
CA455283.1 Clone IMAGE:6723766 mixed 5' read P
CA503409.1 Clone UI-CF-FN0-afq-n-17-0-UI lung 3' read PA
T67203.1 Clone IMAGE:66629 mixed 5' read
AA317440.1 eye 5' read P
T81734.1 Clone IMAGE:115902 mixed 5' read
CA952042.1 Clone IMAGE: pancreas 3' read PA
CA952307.1 Clone IMAGE: pancreas 5' read P
AA470697.1 Clone IMAGE:881073 intestine 3' read PA
AA503388.1 Clone IMAGE:900310 intestine 3' read PA
AA588121.1 Clone IMAGE:1013142 intestine 3' read A
AA621155.1 Clone IMAGE:1046542 mixed 3' read P
AA648858.1 Clone IMAGE:1185749 lymph node 3' read A
AA651782.1 Clone IMAGE:1185342 lymph node 3' read PA
AA632264.1 Clone IMAGE:1131383 mammary gland 3' read A
AA775820.1 Clone IMAGE:878492 brain 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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