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UGID:1630030     UniGene Hs.554892     Homo sapiens (human)   SPRTN
SprT-like N-terminal domain (SPRTN)

Human protein-coding gene SPRTN. Represented by 192 ESTs from 99 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1630030 - Hs.554892]

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_513084.3 PREDICTED: zinc finger RAD18 domain-containing protein C1orf124 homolog P. troglodytes 100.0 488
NP_114407.3 SPRTN gene product H. sapiens 100.0 488
NP_001104611.1 Sprtn gene product M. musculus 83.6 493
NP_001090265.1 exocyst complex component 8 X. laevis 70.0 183
XP_002665697.2 PREDICTED: hypothetical protein LOC568145 D. rerio 69.9 372
NP_505853.1 Protein DVC-1 C. elegans 67.7 220
NP_573032.1 CG9203 D. melanogaster 58.5 229
Other hits (2 of 41) [Show all]SpeciesId(%)Len(aa)
XP_003893815.1 PREDICTED: zinc finger RAD18 domain-containing protein C1orf124 homolog P. anubis 99.2 245
XP_001492883.3 PREDICTED: zinc finger RAD18 domain-containing protein C1orf124 homolog E. caballus 89.5 487

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; brain; mixed; placenta; embryonic tissue; uncharacterized tissue; pancreas; prostate; lymph node; cervix; kidney; mammary gland; mouth; heart; skin; vascular; uterus; spleen; connective tissue; trachea; intestine; liver; thymus; parathyroid; lymph; ascites; blood; adipose tissue; bone marrow; bone; ovary; eye; lung; larynx
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q42.12-q43
UniSTS entry: Chr 1 G20577
UniSTS entry: Chr 1 A005X29 [Map Viewer]
UniSTS entry: Chr 1 WI-13849 [Map Viewer]
UniSTS entry: Chr 1 G20799
UniSTS entry: Chr 1 A006H08 [Map Viewer]
UniSTS entry: Chr 1 D1S1980E
UniSTS entry: Chr 1 RH80352
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AY358611.1 Homo sapiens clone DNA80794 DDDL1880 (UNQ1880) mRNA, complete cds PA
BC068478.1 Homo sapiens chromosome 1 open reading frame 124, mRNA (cDNA clone MGC:87129 IMAGE:5298048), complete cds PA
NM_001010984.2 Homo sapiens SprT-like N-terminal domain (SPRTN), transcript variant 2, mRNA PA
AL512744.1 Homo sapiens mRNA; cDNA DKFZp547N043 (from clone DKFZp547N043) PA
NM_032018.5 Homo sapiens SprT-like N-terminal domain (SPRTN), transcript variant 1, mRNA PA
AK027613.1 Homo sapiens cDNA FLJ14707 fis, clone NT2RP3000599 P
AK027317.1 Homo sapiens cDNA FLJ14411 fis, clone HEMBA1004507 P
BC015740.1 Homo sapiens chromosome 1 open reading frame 124, mRNA (cDNA clone IMAGE:4868368), complete cds PA
NM_001261462.1 Homo sapiens SprT-like N-terminal domain (SPRTN), transcript variant 3, mRNA PA

EST sequences (192)

AI005470.1 Clone IMAGE:1626246 mixed 3' read
AI022301.1 Clone IMAGE:1652237 mixed 3' read P
AI024732.1 Clone IMAGE:1643276 testis 3' read
BX106387.1 Clone IMAGp998G08163_;_IMAGE:36495 brain A
BX090110.1 Clone IMAGp998A064193_;_IMAGE:1652237 mixed PA
CB142597.1 Clone L16HLK3-25-E12 liver 5' read
CB123843.1 Clone L10ChoCK0-31-D01 liver 5' read
AI284434.1 Clone IMAGE:1968289 lymph node 3' read
AI659669.1 Clone IMAGE:2252069 prostate 3' read A
R46825.1 Clone IMAGE:36495 brain 3' read A
AI863537.1 Clone IMAGE:2386313 kidney 3' read
CD109861.1 Clone IMAGE:30345376 placenta 5' read P
F05301.1 Clone c-06f01 brain P
F01559.1 Clone c-06f01 brain 3' read A
CB994332.1 Clone IMAGE:30335714 placenta 5' read P
CB994504.1 Clone IMAGE:30333336 placenta 5' read P
CB994673.1 Clone IMAGE:30335478 placenta 5' read P
CB994778.1 Clone IMAGE:30337847 placenta 5' read P
BX356479.2 Clone CS0DI012YF18 placenta 5' read P
AI952663.1 Clone IMAGE:2549617 ovary 3' read A
AI984687.1 Clone IMAGE:2520866 intestine 3' read PA
CD359590.1 Clone IMAGE:30389495 testis 5' read P
F06518.1 Clone c-1ah10 brain P
Z39470.1 Clone c-1ah10 brain 3' read A
Z43401.1 Clone c-1ah11 brain P
F02793.1 Clone c-1ah11 brain 3' read A
AW137981.1 Clone IMAGE:2714459 mixed 3' read A
CF137435.1 Clone IMAGE:3092511 lymph node 5' read
CF272299.1 Clone IMAGE:30512058 brain 5' read P
CF594074.1 Clone IMAGE:30528099 placenta 5' read P
F08484.1 Clone c-zvd05 brain P
F04699.1 Clone c-zvd05 brain 3' read A
AW341460.1 Clone IMAGE:2909064 mixed 3' read PA
AW386826.1 uncharacterized tissue P
AW404616.1 Clone IMAGE:3058463 lymph node 5' read P
AW581647.1 uncharacterized tissue P
CK818779.1 Clone IMAGE:5675188 pancreas 5' read
CN298868.1 embryonic tissue 5' read P
CN298869.1 embryonic tissue 5' read
CN298870.1 embryonic tissue 5' read
CN298871.1 embryonic tissue 5' read P
CN298866.1 embryonic tissue 5' read P
CN298865.1 embryonic tissue 5' read P
CN298867.1 embryonic tissue 5' read
AW978863.1 uncharacterized tissue
BE018066.1 Clone IMAGE:3048045 cervix 5' read P
CV030145.1 mixed 5' read P
CV030869.1 mixed 5' read P
BE301472.1 Clone IMAGE:3048045 cervix 3' read A
BE410227.1 Clone IMAGE:3630051 placenta 5' read P
CV573663.1 Clone od38g06 eye 5' read P
AV681850.1 Clone GKBAIC06 liver 5' read
DN993057.1 Clone TC102288 brain 5' read P
DN994400.1 Clone TC106836 brain 5' read P
DR006165.1 Clone TC107079 prostate 5' read P
BE856968.1 Clone IMAGE:3300180 mixed 3' read A
AV727888.1 Clone HTCACF02 brain 5' read P
DA234265.1 Clone BRAWH3030398 brain 5' read P
DA103057.1 Clone BRACE3015928 brain 5' read P
DA098102.1 Clone BRACE3008990 brain 5' read P
DA027619.1 Clone ASTRO2011135 brain 5' read P
DA067871.1 Clone BRACE2017857 brain 5' read P
DA186571.1 Clone BRAMY3006499 brain 5' read P
DA036543.1 Clone BEAST2002178 mammary gland 5' read P
DA607730.1 Clone IMR322005008 brain 5' read P
DA660688.1 Clone MESAN2017713 kidney 5' read P
DA459380.1 Clone CTONG3005796 mouth 5' read
DA655703.1 Clone MESAN2011171 kidney 5' read P
DA657326.1 Clone MESAN2013252 kidney 5' read P
DA618464.1 Clone IMR322018435 brain 5' read P
DA397123.1 Clone BRTHA2037176 brain 5' read P
DA358059.1 Clone BRSTN2003544 brain 5' read P
DA665791.1 Clone NB9N42001463 uncharacterized tissue 5' read P
DA403931.1 Clone BRTHA3008252 brain 5' read
DA411432.1 Clone BRTHA3018607 brain 5' read
DA372697.1 Clone BRTHA2003038 brain 5' read
DA570307.1 Clone HEMBA1004507 embryonic tissue 5' read P
AW614332.1 Clone IMAGE:2951857 kidney 3' read
DA531312.1 Clone FEBRA2024533 brain 5' read P
DA453999.1 Clone CTONG2027058 mouth 5' read
DA414171.1 Clone BRTHA3022420 brain 5' read P
DA376824.1 Clone BRTHA2008633 brain 5' read P
DA455318.1 Clone CTONG2028714 mouth 5' read P
DA455920.1 Clone CTONG3000827 mouth 5' read P
DA489768.1 Clone FCBBF3000839 brain 5' read
DA953887.1 Clone SPLEN2031995 spleen 5' read P
DA993179.1 Clone SYNOV4005615 connective tissue 5' read P
DA882242.1 Clone PUAEN2001746 vascular 5' read P
DB035244.1 Clone TESTI2020555 testis 5' read
DA726324.1 Clone NT2RI3008257 testis 5' read P
DA767825.1 Clone NTONG2009576 mouth 5' read P
DA735289.1 Clone NT2RP3000599 testis 5' read P
DA750544.1 Clone NT2RP7016257 testis 5' read P
DA823503.1 Clone PERIC2004049 heart 5' read P
DA712339.1 Clone NT2RI2018540 5' read P
BF509960.1 Clone IMAGE:3087499 uncharacterized tissue 3' read A
BF571132.1 Clone IMAGE:4252653 skin 5' read
DA946016.1 Clone SPLEN2021664 spleen 5' read P
DB080032.1 Clone TESTI4025425 testis 5' read P
DB258958.1 Clone UTERU2015710 uterus 5' read P
DB232753.1 Clone TRACH3026747 trachea 5' read
DB082606.1 Clone TESTI4028998 testis 5' read P
DB078412.1 Clone TESTI4023266 testis 5' read P
DB241048.1 Clone TRACH3037746 trachea 5' read
DB268683.1 Clone UTERU2029368 uterus 5' read P
DB079303.1 Clone TESTI4024421 testis 5' read P
DB079967.1 Clone TESTI4025346 testis 5' read P
DB165768.1 Clone THYMU3047915 thymus 5' read P
DB100180.1 Clone TESTI4052032 testis 5' read P
DB212396.1 Clone TRACH3000073 trachea 5' read P
DB212806.1 Clone TRACH3000653 trachea 5' read
DB357066.1 Clone HEMBA1004507 embryonic tissue 3' read A
DB062812.1 Clone TESTI4003073 testis 5' read
DB057352.1 Clone TESTI2049487 testis 5' read
DB143744.1 Clone THYMU3018024 thymus 5' read P
DB367526.1 Clone NT2RP3000599 testis 3' read
DB073330.1 Clone TESTI4016655 testis 5' read P
BG036149.1 Clone IMAGE:4414243 liver 5' read P
BF977689.1 Clone IMAGE:4307304 skin 5' read
BF978051.1 Clone IMAGE:4306980 skin 5' read
DB462766.1 Clone H013099O16 testis 5' read P
DB517609.1 Clone H013056A18 testis 3' read
DB442221.1 Clone H013003C20 testis 5' read
DB445970.1 Clone H013023A10 testis 5' read P
DB446464.1 Clone H013025H02 testis 5' read
DB447693.1 Clone H013033A12 testis 5' read P
AL521107.3 Clone CS0DB001YI15 uncharacterized tissue 3' read
DB452080.1 Clone H013056A18 testis 5' read P
DB525568.1 Clone H013088L14 testis 3' read A
DB455010.1 Clone H013067J02 testis 5' read P
DB511648.1 Clone H013025H02 testis 3' read A
DB457376.1 Clone H013077G16 testis 5' read P
DB459686.1 Clone H013087A02 testis 5' read
DB460129.1 Clone H013088L14 testis 5' read P
AL583485.3 Clone CS0DB001YI15 uncharacterized tissue 5' read P
EC509861.1 prostate
EC579846.1 prostate
DT217626.1 brain P
BG572915.1 Clone IMAGE:4721228 placenta 5' read P
BG746792.1 Clone IMAGE:4857270 intestine 5' read P
BG823699.1 Clone IMAGE:4868368 intestine 5' read
BI038800.1 brain
EL736838.1 mixed 5' read P
BG704879.1 Clone IMAGE:4820648 brain 5' read P
BG718257.1 Clone IMAGE:4828448 testis 5' read P
BG718264.1 Clone IMAGE:4828498 testis 5' read P
BG721494.1 Clone IMAGE:4827496 testis 5' read P
BG721564.1 Clone IMAGE:4827497 testis 5' read P
BG721688.1 Clone IMAGE:4828160 testis 5' read P
BI459193.1 Clone IMAGE:5266417 testis 5' read P
BI559883.1 Clone IMAGE:5295362 testis 5' read
BI562504.1 Clone IMAGE:5298048 testis 5' read
BI761536.1 Clone IMAGE:5186900 mixed 5' read P
BI761715.1 Clone IMAGE:5186853 mixed 5' read P
W15342.1 Clone IMAGE:322532 parathyroid 3' read
BM126719.1 Clone IMAGE:5675188 pancreas 3' read PA
BM127014.1 Clone IMAGE:5675188 pancreas 5' read P
BM478181.1 Clone IMAGE:5552837 lymph 5' read P
BM480135.1 Clone IMAGE:5574072 intestine 5' read P
W39433.1 Clone IMAGE:322532 parathyroid 5' read
BM794141.1 Clone S22SNU16n1-37-C11 ascites 5' read P
BM825143.1 Clone S22SNU16n1-104-D05 ascites 5' read
BQ073042.1 Clone IMAGE:5757350 blood 5' read P
BQ695202.1 adipose tissue 5' read
BM146501.1 Clone TCAAP4971 bone marrow
BQ962863.1 Clone IMAGE:6500494 uterus 5' read
AA081452.1 Clone IMAGE:546677 testis 5' read
AA084733.1 Clone IMAGE:546677 testis 3' read PA
FN046444.1 Clone 001666_3474_1690
BU597082.1 Clone IMAGE:6453866 mixed 5' read
BU622255.1 Clone UI-H-FH1-bfu-j-19-0-UI bone 3' read PA
HY003789.1 Clone H04D013I02 testis
HY007142.1 Clone H04D024I19 testis P
HY012723.1 Clone H04D044E06 testis P
HY015659.1 Clone H04D053M16 testis P
HY026177.1 Clone H04D089H01 testis
HY033107.1 Clone H04D114I15 testis P
HY043828.1 Clone H04D154D01 testis P
HY187341.1 Clone H04D013I02 testis
HY196908.1 Clone H04D044E06 testis
CA307905.1 Clone UI-H-FT1-bib-c-13-0-UI lung 3' read PA
CA428299.1 Clone UI-H-DF0-ber-e-04-0-UI bone 3' read PA
CA432649.1 Clone UI-H-FL1-bgs-p-01-0-UI bone 3' read PA
AA360189.1 uncharacterized tissue 5' read
T87195.1 Clone IMAGE:115636 mixed 3' read
T87282.1 Clone IMAGE:115636 mixed 5' read
AA579673.1 Clone IMAGE:1073780 intestine 3' read P
AA586969.1 Clone IMAGE:1089125 larynx 3' read
AA693492.1 Clone 1276305 testis 3' read P
AA757970.1 Clone 1309852 testis 3' read A
AA829880.1 Clone IMAGE:1369595 lymph node 3' read A
R11413.1 Clone IMAGE:129877 mixed 5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

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