| UGID:1415211 UniGene Hs.546918 Homo sapiens (human) FLJ43681 |
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Ribosomal protein L23a pseudogene (FLJ43681)
Human pseudo gene FLJ43681. Represented by 8 ESTs from 5 cDNA libraries. Corresponds to reference sequence NR_029406.1. [UniGene 1415211 - Hs.546918]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
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PREDICTED: 60S ribosomal protein L23a-like |
P. troglodytes |
85.1 |
120 |
|
|
RPL23A gene product |
H. sapiens |
82.5 |
120 |
|
|
PREDICTED: 60S ribosomal protein L23a-like |
M. musculus |
76.4 |
127 |
|
|
60S ribosomal protein L23a |
X. laevis |
71.4 |
140 |
|
|
rpl23a gene product |
D. rerio |
65.3 |
150 |
|
|
60S ribosomal protein L23a-2 |
A. thaliana |
62.9 |
116 |
|
|
ribosomal protein L23A |
D. melanogaster |
50.0 |
152 |
| Other hits (2 of 42) [Show all] | Species | Id(%) | Len(aa) |
|
|
PREDICTED: 60S ribosomal protein L23a-like |
B. taurus |
83.3 |
120 |
|
|
PREDICTED: 60S ribosomal protein L23a-like |
O. aries |
83.3 |
120 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
|
EST Profile: | Approximate expression patterns inferred from EST sources. |
|
GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
heart; placenta; mammary gland; ovary; connective tissue |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
|
Chromosome: |
17 |
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Map position: |
17q25.3 |
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UniSTS entry: |
Chr 1 |
D11S3114 |
|
|
UniSTS entry: |
Chr 5 |
REN95794 |
|
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (3)
|
AK125669.1 |
Homo sapiens cDNA FLJ43681 fis, clone TBAES2001229, moderately similar to 60S ribosomal protein L23a |
P |
|
DQ786232.1 |
Homo sapiens clone HLS_IMAGE_1759573 mRNA sequence |
A |
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NR_029406.1 |
Homo sapiens ribosomal protein L23a pseudogene (FLJ43681), non-coding RNA |
P |
EST sequences (8)
|
AW884435.1 |
|
ovary |
|
|
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DA999728.1 |
Clone TBAES2001229 |
mammary gland |
5' read |
|
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DB335161.1 |
Clone TBAES2001229 |
mammary gland |
3' read |
|
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N84105.1 |
Clone KK5839 |
heart |
5' read |
|
|
BQ011175.1 |
Clone UI-1-BC1p-ayy-d-03-0-UI |
placenta |
3' read |
A |
|
BQ012131.1 |
Clone UI-1-BC1p-ath-f-07-0-UI |
placenta |
3' read |
A |
|
BQ013085.1 |
Clone UI-1-BC1p-ayl-b-05-0-UI |
placenta |
3' read |
A |
|
BQ181729.1 |
Clone IMAGE:5854158 |
connective tissue |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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