> AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P)
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UGID:1371087     UniGene Hs.534773     Homo sapiens (human)   AFG3L1P Links
AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P)

Human pseudo gene AFG3L1P. Represented by 154 ESTs from 104 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 1371087 - Hs.534773]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003917403.1 PREDICTED: AFG3-like protein 1-like P. anubis 80.9 685
XP_003952976.1 PREDICTED: LOW QUALITY PROTEIN: AFG3-like protein 1-like P. troglodytes 80.8 520
NP_473411.2 Afg3l1 gene product M. musculus 69.7 784
NP_006787.2 AFG3L2 gene product H. sapiens 69.0 197
NP_001104667.1 afg3l2 gene product D. rerio 67.5 212
NP_730250.1 CG6512, isoform B D. melanogaster 61.0 195
NP_491165.2 Protein SPG-7 C. elegans 60.8 194
Other hits (2 of 39) [Show all]SpeciesId(%)Len(aa)
XP_002723539.1 PREDICTED: Afg3l1 protein-like O. cuniculus 77.1 683
XP_003364661.1 PREDICTED: LOW QUALITY PROTEIN: AFG3-like protein 1-like E. caballus 76.1 197

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; thyroid; mammary gland; skin; heart; adrenal gland; pharynx; testis; blood; prostate; mixed; uterus; uncharacterized tissue; lung; intestine; placenta; mouth; thymus; pituitary gland; liver; tonsil; eye; kidney; embryonic tissue; connective tissue; pancreas; muscle; larynx; stomach; ovary; bladder; nerve; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q24.3
UniSTS entry: Chr 1 GDB:335751
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

AK128804.1 Homo sapiens cDNA FLJ45794 fis, clone NT2RI2009239
AK128352.1 Homo sapiens cDNA FLJ46494 fis, clone THYMU3028410, weakly similar to AFG3-like protein 1 (EC 3.4.24.-) P
AK127143.1 Homo sapiens cDNA FLJ45200 fis, clone BRCAN2006051, moderately similar to AFG3-like protein 2 (EC 3.4.24.-) P
AK126911.1 Homo sapiens cDNA FLJ44963 fis, clone BRAWH2014053, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA P
BC077734.1 Homo sapiens cDNA clone IMAGE:6305582, partial cds A
AF329692.1 Homo sapiens AFG3L1 isoform 2 mRNA, partial sequence P
AF329691.1 Homo sapiens AFG3L1 isoform 1 mRNA, partial sequence P
AK056488.1 Homo sapiens cDNA FLJ31926 fis, clone NT2RP7005502, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA P
AK091727.1 Homo sapiens cDNA FLJ34408 fis, clone HEART2000959, moderately similar to Homo sapiens mRNA for paraplegin-like protein P
AK091293.1 Homo sapiens cDNA FLJ33974 fis, clone DFNES2002550, highly similar to Homo sapiens AFG3 ATPase family gene 3-like 1 (yeast) (AFG3L1), transcript variant 1, mRNA P
AK090856.1 Homo sapiens cDNA FLJ33537 fis, clone BRAMY2007546
AF329694.1 Homo sapiens AFG3L1 isoform 4 mRNA, partial sequence P
AF329693.1 Homo sapiens AFG3L1 isoform 3 mRNA, partial sequence P
AJ001495.1 Homo sapiens mRNA for AFG3-like protein
NR_003226.1 Homo sapiens AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 1, non-coding RNA PA
NR_003228.1 Homo sapiens AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 3, non-coding RNA PA
NR_003227.1 Homo sapiens AFG3 ATPase family member 3-like 1 (S. cerevisiae), pseudogene (AFG3L1P), transcript variant 2, non-coding RNA PA

EST sequences (154)

BX114649.1 Clone IMAGp998D18390_;_IMAGE:202337 mixed
BX099845.1 Clone IMAGp998D124458_;_IMAGE:1754075 testis
AI215191.1 Clone IMAGE:1883049 lung 3' read A
CB163770.1 Clone L17N670205n1-46-E02 liver 5' read
AI373186.1 Clone IMAGE:2021416 uncharacterized tissue 3' read
AI689825.1 Clone IMAGE:2271157 lung 3' read PA
AI693214.1 Clone IMAGE:2336789 lung 3' read PA
AI859065.1 Clone IMAGE:2429877 brain 3' read
AI969182.1 Clone IMAGE:2545780 pituitary gland 3' read
CD366619.1 Clone UI-H-FT2-bjl-l-20-0-UI lung 3' read A
CD556395.1 Clone IMAGE:30393199 pituitary gland 5' read
BX508959.1 Clone DKFZp686K05277 muscle 5' read
AW138208.1 Clone IMAGE:2714826 mixed 3' read PA
AI907905.1 mammary gland
AI909894.1 mammary gland
AW237430.1 Clone IMAGE:2689700 kidney 3' read A
AW371407.1 mammary gland
AW819683.1 stomach
AW901035.1 brain
CN267692.1 embryonic tissue 5' read
CN415011.1 embryonic tissue 5' read
AW967114.1 uncharacterized tissue
BP873170.1 Clone HKR11489 kidney 5' read
CV028763.1 mixed 5' read
CR740931.1 Clone IMAGp998H23972_;_IMAGE:415558 uncharacterized tissue 5' read
CV319394.1 brain
CV328592.1 blood
CV328619.1 blood
CV328513.1 blood
CV329306.1 brain
CV329270.1 brain
CV354253.1 uterus
CX751981.1 Clone IMAGE:7783497 embryonic tissue 3' read
DN992972.1 Clone TC102255 brain 5' read P
DR003672.1 Clone TC104579 brain 5' read
DR005480.1 Clone TC101060 prostate 5' read
BE932126.1 thyroid
BF087812.1 thyroid
BF087842.1 thyroid
BF110425.1 Clone IMAGE:3568332 lung 3' read PA
H53035.1 Clone IMAGE:202337 mixed 5' read
H53036.1 Clone IMAGE:202337 mixed 3' read
BF352468.1 thyroid
BF353156.1 pharynx
BF353342.1 pharynx
BF370555.1 prostate
DA198586.1 Clone BRAWH2001745 brain 5' read
DA316906.1 Clone BRHIP3007948 brain 5' read P
DA009807.1 Clone ADRGL2001159 adrenal gland 5' read
DA127983.1 Clone BRACE3051450 brain 5' read
DA207089.1 Clone BRAWH2014053 brain 5' read
DA059398.1 Clone BRACE2007412 brain 5' read
DA104810.1 Clone BRACE3018404 brain 5' read
DA255233.1 Clone BRCAN2006051 brain 5' read P
DA112780.1 Clone BRACE3030762 brain 5' read P
DA074305.1 Clone BRACE2025743 brain 5' read
DA081667.1 Clone BRACE2035063 brain 5' read
DA114236.1 Clone BRACE3032798 brain 5' read
DA121197.1 Clone BRACE3042218 brain 5' read
DA149905.1 Clone BRAMY2007546 brain 5' read
DA419322.1 Clone CD34C2000087 blood 5' read
DA387750.1 Clone BRTHA2023601 brain 5' read
DA511246.1 Clone FCBBF3028283 brain 5' read
DA474196.1 Clone DFNES2002550 skin 5' read
DA586987.1 Clone HLUNG2007834 lung 5' read
DA560251.1 Clone HEART2000959 heart 5' read
DA398297.1 Clone BRTHA3000347 brain 5' read
DA365549.1 Clone BRSTN2013177 brain 5' read
DA562617.1 Clone HEART2004184 heart 5' read
DA445291.1 Clone CTONG2015830 mouth 5' read
DB001266.1 Clone TBAES2003156 mammary gland 5' read
DB029110.1 Clone TESTI2012183 testis 5' read
DA733422.1 Clone NT2RP2002925 testis 5' read
DA989185.1 Clone SYNOV4000416 connective tissue 5' read
DA740893.1 Clone NT2RP7003377 testis 5' read
DA918429.1 Clone SMINT2003333 intestine 5' read
DA742209.1 Clone NT2RP7005502 testis 5' read
DA736654.1 Clone NT2RP3003939 testis 5' read
DA927941.1 Clone SMINT2015294 intestine 5' read
DA705594.1 Clone NT2RI2009239 5' read
DA857528.1 Clone PLACE7008842 placenta 5' read
DA707802.1 Clone NT2RI2012393 5' read
DA898575.1 Clone SKMUS2006911 muscle 5' read
DA990506.1 Clone SYNOV4002105 connective tissue 5' read
H80874.1 Clone IMAGE:240858 mixed 5' read
H80875.1 Clone IMAGE:240858 mixed 3' read
DB107994.1 Clone THYMU2010125 thymus 5' read P
DB153965.1 Clone THYMU3031760 thymus 5' read
DB069789.1 Clone TESTI4012130 testis 5' read
DB162853.1 Clone THYMU3043942 thymus 5' read
DB157156.1 Clone THYMU3036117 thymus 5' read
DB275180.1 Clone UTERU3000117 uterus 5' read
DB164996.1 Clone THYMU3046881 thymus 5' read
DB087820.1 Clone TESTI4035855 testis 5' read
DB166061.1 Clone THYRO1000615 thyroid 5' read
DB324767.1 Clone NT2RP7005502 testis 3' read
DB318727.1 Clone HEART2000959 heart 3' read PA
DB318782.1 Clone HEART2004184 heart 3' read PA
DB181830.1 Clone TLIVE2000698 liver 5' read
DB059932.1 Clone TESTI2053082 testis 5' read
DB105555.1 Clone THYMU2006386 thymus 5' read
DB151189.1 Clone THYMU3028028 thymus 5' read
DB151477.1 Clone THYMU3028410 thymus 5' read
DW442153.1 liver
BF819628.1 kidney
DW461805.1 liver
BF834253.1 larynx
BG036321.1 Clone IMAGE:4427954 prostate 5' read
BF984456.1 Clone IMAGE:4399225 intestine 5' read A
BF974129.1 Clone IMAGE:4334866 tonsil 5' read
BF931427.1 brain
BF935904.1 brain
BF948467.1 brain
BF903626.1 blood
BG394120.1 Clone IMAGE:4578766 eye 5' read
BG570268.1 Clone IMAGE:4717482 lung 5' read P
BG654501.1 pancreas 5' read
BI056202.1 placenta
BG954408.1 intestine
BI764386.1 Clone IMAGE:5186451 mixed 5' read
BM051047.1 Clone IMAGE:5424345 eye 5' read
BM553984.1 Clone IMAGE:5742276 brain 5' read
BM720338.1 Clone UI-E-EJ0-ahv-n-22-0-UI eye 5' read
W52555.1 Clone IMAGE:338490 pancreas 5' read
BM803134.1 Clone IMAGE:5721525 ovary 5' read P
BM807451.1 Clone IMAGE:5732379 brain 5' read
W63608.1 Clone IMAGE:338490 pancreas 3' read
W78808.1 Clone IMAGE:415561 mixed 5' read
BQ299864.1 bladder
BQ327488.1 kidney P
BQ339314.1 brain
BQ339329.1 brain
BQ367110.1 placenta
BQ641485.1 Clone IMAGE:6305582 eye 5' read
BQ717915.1 Clone IMAGE:6187061 nerve 5' read
BQ893592.1 Clone IMAGE:6182429 ganglia 5' read
W22606.1 eye
BY997176.1 Clone MCT1532 5' read
AA180768.1 Clone IMAGE:612231 muscle 5' read
BU676803.1 Clone UI-CF-DU1-aam-d-09-0-UI lung 3' read A
BU955967.1 Clone IMAGE:6729435 mammary gland 5' read
BU951039.1 Clone IMAGE:6132052 pancreas 5' read
HY055563.1 Clone H04D196J22 testis
HY189184.1 Clone H04D019B12 testis P
HY243653.1 Clone H04D196J22 testis
HY244029.1 Clone H04D197L23 testis P
CA396935.1 Clone cs83h09 eye 5' read
CA433594.1 Clone UI-H-CO0-ata-h-01-0-UI uncharacterized tissue 3' read A
AA312522.1 blood 5' read
AA318028.1 eye 5' read
AA350737.1 brain 3' read
T91343.1 Clone IMAGE:116454 mixed 3' read
AA593352.1 Clone IMAGE:1076987 prostate
AA780055.1 Clone IMAGE:451247 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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