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UGID:902698     UniGene Hs.511951     Homo sapiens (human)   ABCB9
ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9)

Human protein-coding gene ABCB9. Represented by 180 ESTs from 74 cDNA libraries. Corresponds to 5 reference sequences (different isoforms). [UniGene 902698 - Hs.511951]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003314045.1 PREDICTED: ATP-binding cassette sub-family B member 9 isoform 1 P. troglodytes 100.0 765
NP_062571.1 ABCB9 gene product H. sapiens 100.0 765
XP_001096136.2 PREDICTED: ATP-binding cassette sub-family B member 9 isoform 1 M. mulatta 99.7 765
XP_003907372.1 PREDICTED: ATP-binding cassette sub-family B member 9 isoform 1 P. anubis 99.7 765
NP_063928.2 Abcb9 gene product M. musculus 96.7 761
NP_001119906.1 ATP-binding cassette sub-family B member 9 D. rerio 62.9 757
NP_001021666.1 Protein HAF-4 C. elegans 54.4 542
NP_001085260.1 antigen peptide transporter 2 X. laevis 51.4 562
NP_198720.2 ABC transporter B family member 27 A. thaliana 51.2 320
XP_001692124.1 hypothetical protein CHLREDRAFT_100930 C. reinhardtii 50.9 228
XP_959059.2 hypothetical protein NCU07546 N. crassa 49.8 895
NP_647634.1 ABCB7, isoform C D. melanogaster 46.8 233
Other hits (2 of 60) [Show all]SpeciesId(%)Len(aa)
NP_071574.1 Abcb9 gene product R. norvegicus 96.3 761
XP_001928626.1 PREDICTED: ATP-binding cassette sub-family B member 9 S. scrofa 96.2 767

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; kidney; uncharacterized tissue; mammary gland; liver; intestine; thymus; trachea; eye; mixed; lung; cervix; uterus; embryonic tissue; salivary gland; skin; ascites; stomach; bone; mouth; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q24
UniSTS entry: Chr 12 HSC1CH052 [Map Viewer]
UniSTS entry: Chr 12 A004P27 [Map Viewer]
UniSTS entry: Chr 12 ABCB9_677
UniSTS entry: Chr 4 RH79740
UniSTS entry: Chr 1 D1S1425
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AB112583.1 Homo sapiens TAPL mRNA for TAP-Like isoform 12C, complete cds P
AB112582.1 Homo sapiens TAPL mRNA for TAP-Like isoform 12B, complete cds P
BC064384.1 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9, mRNA (cDNA clone MGC:74955 IMAGE:5744451), complete cds PA
NM_203444.3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 4, mRNA PA
AB177852.1 Homo sapiens mRNA for KIAA1520 splice variant 1 P
NM_019625.3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 1, mRNA PA
NM_019624.3 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 2, mRNA PA
AB045381.2 Homo sapiens TAPL mRNA for TAPL, complete cds P
AF216494.1 Homo sapiens ATP-binding cassette protein ABCB9 (ABCB9) mRNA, complete cds P
BC017348.2 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9, mRNA (cDNA clone MGC:29663 IMAGE:5014247), complete cds PA
AK294225.1 Homo sapiens cDNA FLJ57967 complete cds, highly similar to ATP-binding cassette sub-family B member 9 precursor P
AK304295.1 Homo sapiens cDNA FLJ61550 complete cds, highly similar to Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 2, mRNA PA
AK074738.1 Homo sapiens cDNA FLJ90257 fis, clone NT2RM4000444, weakly similar to ANTIGEN PEPTIDE TRANSPORTER 1 P
U66676.1 Homo sapiens clone EST122234 mRNA sequence
NM_001243014.1 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 5, mRNA P
NM_001243013.1 Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 9 (ABCB9), transcript variant 6, mRNA PA

EST sequences (180)

AA906467.1 Clone IMAGE:1506462 mixed 3' read A
R25718.1 Clone IMAGE:36371 brain 5' read
AI206549.1 Clone IMAGE:1754467 testis 3' read A
CB134746.1 Clone L5HLK1-31-F04 liver 5' read
CB153064.1 Clone B1T694954-22-B12 brain 5' read P
CB149401.1 Clone L15CKK1-40-G03 liver 5' read P
AI369043.1 Clone IMAGE:1992337 uterus 3' read A
CB218995.1 Clone IMAGE:5795970 bone 3' read
AI425047.1 Clone IMAGE:2112227 mixed 3' read A
AI809447.1 Clone IMAGE:2360990 mixed 3' read A
BX279993.1 Clone IMAGp998M147847_;_IMAGE:3209653 uncharacterized tissue
BX376706.2 Clone CS0DD004YA23 uncharacterized tissue 5' read
BX341565.2 Clone CS0DK002YI08 cervix 3' read
BX341566.2 Clone CS0DK002YI08 cervix 5' read P
BX362944.2 Clone CS0DK006YC09 cervix 3' read
BX384211.2 Clone CS0DK006YC09 cervix 5' read P
F06569.1 Clone c-1ch05 brain
Z39550.1 Clone c-1ch05 brain 3' read A
AW139200.1 Clone IMAGE:2720511 mixed 3' read A
AW139732.1 Clone IMAGE:2718709 mixed 3' read A
R62463.1 Clone IMAGE:36371 brain 3' read A
AW590442.1 Clone IMAGE:2947623 uncharacterized tissue 3' read A
CN428999.1 embryonic tissue 5' read P
CN429000.1 embryonic tissue 5' read P
AW977981.1 uncharacterized tissue
BE504895.1 Clone IMAGE:3209653 uncharacterized tissue 3' read A
BE791652.1 Clone IMAGE:3940317 lung 5' read P
DR003131.1 Clone TC110310 brain 5' read P
DR003465.1 Clone TC107131 brain 5' read P
BF317266.1 Clone IMAGE:4130560 brain 5' read
DA234268.1 Clone BRAWH3030402 brain 5' read P
DA123331.1 Clone BRACE3045169 brain 5' read P
DA117603.1 Clone BRACE3037337 brain 5' read P
DA241831.1 Clone BRAWH3039695 brain 5' read P
DA229263.1 Clone BRAWH3023859 brain 5' read P
DA347252.1 Clone BRSSN2008601 brain 5' read P
DA236865.1 Clone BRAWH3033623 brain 5' read P
DA119196.1 Clone BRACE3039482 brain 5' read P
DA119414.1 Clone BRACE3039793 brain 5' read P
DA047703.1 Clone BNGH42000715 brain 5' read P
DA126692.1 Clone BRACE3049753 brain 5' read
DA126765.1 Clone BRACE3049858 brain 5' read P
DA244284.1 Clone BRAWH3042714 brain 5' read P
DA244618.1 Clone BRAWH3043127 brain 5' read P
DA211298.1 Clone BRAWH3000475 brain 5' read P
DA238750.1 Clone BRAWH3035967 brain 5' read P
DA127087.1 Clone BRACE3050272 brain 5' read P
DA205825.1 Clone BRAWH2012347 brain 5' read P
DA205855.1 Clone BRAWH2012392 brain 5' read P
DA127766.1 Clone BRACE3051163 brain 5' read P
DA101070.1 Clone BRACE3013110 brain 5' read P
DA168093.1 Clone BRAMY2029724 brain 5' read P
DA096210.1 Clone BRACE3006316 brain 5' read P
DA096854.1 Clone BRACE3007217 brain 5' read P
DA319299.1 Clone BRHIP3011448 brain 5' read P
DA319325.1 Clone BRHIP3011488 brain 5' read P
DA104530.1 Clone BRACE3017948 brain 5' read P
DA104842.1 Clone BRACE3018452 brain 5' read
DA026490.1 Clone ASTRO2009727 brain 5' read P
DA099127.1 Clone BRACE3010424 brain 5' read P
DA144553.1 Clone BRAMY2000805 brain 5' read P
DA184552.1 Clone BRAMY3003145 brain 5' read P
DA184559.1 Clone BRAMY3003154 brain 5' read P
DA217859.1 Clone BRAWH3008879 brain 5' read P
DA107978.1 Clone BRACE3022944 brain 5' read P
DA231697.1 Clone BRAWH3026974 brain 5' read P
DA186346.1 Clone BRAMY3006123 brain 5' read P
DA193568.1 Clone BRAMY3017550 brain 5' read P
DA232400.1 Clone BRAWH3027950 brain 5' read P
DA121239.1 Clone BRACE3042276 brain 5' read P
DA148779.1 Clone BRAMY2006122 brain 5' read P
DA109569.1 Clone BRACE3026221 brain 5' read P
DA233623.1 Clone BRAWH3029582 brain 5' read P
DA122672.1 Clone BRACE3044270 brain 5' read P
DA122734.1 Clone BRACE3044360 brain 5' read P
DA497882.1 Clone FCBBF3011069 brain 5' read P
DA392375.1 Clone BRTHA2030364 brain 5' read P
DA510541.1 Clone FCBBF3027354 brain 5' read P
DA622073.1 Clone KIDNE2001156 kidney 5' read P
DA511278.1 Clone FCBBF3028327 brain 5' read P
DA394065.1 Clone BRTHA2032792 brain 5' read P
DA401212.1 Clone BRTHA3004456 brain 5' read
DA389834.1 Clone BRTHA2026656 brain 5' read P
DA389850.1 Clone BRTHA2026680 brain 5' read P
DA402433.1 Clone BRTHA3006187 brain 5' read
DA658739.1 Clone MESAN2015150 kidney 5' read P
DA665751.1 Clone NB9N42001405 uncharacterized tissue 5' read P
DA632630.1 Clone KIDNE2014234 kidney 5' read P
DA399508.1 Clone BRTHA3002053 brain 5' read P
DA374218.1 Clone BRTHA2005093 brain 5' read P
DA531294.1 Clone FEBRA2024507 brain 5' read P
DA690243.1 Clone NT2NE2009604 5' read P
DA350238.1 Clone BRSSN2012755 brain 5' read P
DA416269.1 Clone BRTHA3025373 brain 5' read P
DA495488.1 Clone FCBBF3008074 brain 5' read P
DA456293.1 Clone CTONG3001414 mouth 5' read P
DA797480.1 Clone OCBBF3000601 brain 5' read P
DA798730.1 Clone OCBBF3002196 brain 5' read P
DA811473.1 Clone OCBBF3028423 brain 5' read P
DA811510.1 Clone OCBBF3028471 brain 5' read P
DA811635.1 Clone OCBBF3028630 brain 5' read P
DA805160.1 Clone OCBBF3020099 brain 5' read P
DA917704.1 Clone SMINT2002440 intestine 5' read P
DA741904.1 Clone NT2RP7004978 testis 5' read P
DA735619.1 Clone NT2RP3001453 testis 5' read P
DA742107.1 Clone NT2RP7005334 testis 5' read P
DA775733.1 Clone OCBBF2009705 brain 5' read P
DA742809.1 Clone NT2RP7006441 testis 5' read P
DA999359.1 Clone TBAES2000742 mammary gland 5' read P
DA710739.1 Clone NT2RI2016294 5' read P
DA784010.1 Clone OCBBF2020268 brain 5' read P
DA778914.1 Clone OCBBF2013674 brain 5' read P
DA791450.1 Clone OCBBF2030542 brain 5' read P
DA752270.1 Clone NT2RP7018281 testis 5' read P
DA720312.1 Clone NT2RI3000397 testis 5' read P
DA720788.1 Clone NT2RI3001027 testis 5' read P
DA800138.1 Clone OCBBF3004012 brain 5' read P
DA795754.1 Clone OCBBF2036727 brain 5' read
DA789806.1 Clone OCBBF2028253 brain 5' read P
DA796102.1 Clone OCBBF2037199 brain 5' read P
DA730632.1 Clone NT2RM4000444 testis 5' read P
DA724142.1 Clone NT2RI3005458 testis 5' read P
DB139613.1 Clone THYMU3012270 thymus 5' read P
DB068276.1 Clone TESTI4010160 testis 5' read
DB231510.1 Clone TRACH3025131 trachea 5' read P
DB154055.1 Clone THYMU3031882 thymus 5' read P
DB311063.1 Clone BRTHA2005093 brain 3' read A
DB083003.1 Clone TESTI4029495 testis 5' read P
DB306075.1 Clone BRAWH3043584 brain 3' read A
DB086008.1 Clone TESTI4033455 testis 5' read
DB164901.1 Clone THYMU3046755 thymus 5' read P
DB131685.1 Clone THYMU3001403 thymus 5' read P
DB282989.1 Clone UTERU3010437 uterus 5' read P
DB309317.1 Clone BRHIP3019532 brain 3' read A
DB093326.1 Clone TESTI4043272 testis 5' read
DB087321.1 Clone TESTI4035202 testis 5' read P
DB362544.1 Clone NT2RM4000444 testis 3' read A
DB089526.1 Clone TESTI4038144 testis 5' read
DB063147.1 Clone TESTI4003520 testis 5' read
DB066590.1 Clone TESTI4007975 testis 5' read
DB066918.1 Clone TESTI4008389 testis 5' read
DB551908.1 Clone H023095O13 brain 3' read A
EB385987.1 Clone nbj10b09 brain 5' read P
N40559.1 Clone IMAGE:276822 brain 3' read A
BG470856.1 Clone IMAGE:4634378 eye 5' read P
BG471775.1 Clone IMAGE:4636037 eye 5' read P
BI084284.1 Clone IMAGE:5014247 salivary gland 5' read P
EL733566.1 mixed 5' read P
DC398339.1 Clone TESTI2037321 testis 5' read P
DC313845.1 Clone BRAMY2012016 brain 5' read P
EL953086.1 eye 5' read
BI753381.1 Clone IMAGE:5197094 brain 5' read P
BI754040.1 Clone IMAGE:5197821 brain 5' read P
BI831094.1 Clone IMAGE:5172658 brain 5' read P
BI856176.1 Clone IMAGE:5391695 mammary gland 5' read
CU446788.1 skin P
BM559845.1 Clone IMAGE:5744451 brain 5' read
BM672327.1 Clone UI-E-CL1-aem-a-05-0-UI eye 3' read
BM681656.1 Clone UI-E-EJ0-aij-n-07-0-UI eye 3' read A
BM692283.1 Clone UI-E-CL1-aer-d-12-0-UI eye 5' read
BM700997.1 Clone UI-E-CL1-aem-a-05-0-UI eye 5' read
BM740793.1 Clone S3SNU16-6-H05 ascites 5' read
BM752647.1 Clone S3SNU16-22-H06 ascites 5' read
BM791650.1 Clone S21SNU520-23-H04 stomach 5' read P
BM795184.1 Clone S21SNU520-26-C10 stomach 5' read P
BM820758.1 Clone S3SNU16-40-B08 ascites 5' read
BM821437.1 Clone S21SNU520s1-5-B12 stomach 5' read P
BQ637312.1 Clone he08e01 eye 5' read P
BG116117.1 Clone IMAGE:4418488 intestine 5' read P
BQ941009.1 Clone IMAGE:6454677 lung 5' read P
BU156679.1 Clone IMAGE:6174325 uterus 5' read
BU558152.1 Clone IMAGE:6586393 mammary gland 5' read P
HY003541.1 Clone H04D012L08 testis P
HY025491.1 Clone H04D087C09 testis P
HY051200.1 Clone H04D181G06 testis
HY187073.1 Clone H04D012L08 testis
HY209263.1 Clone H04D087C09 testis P
CA503047.1 Clone UI-CF-FN0-afp-c-04-0-UI lung 3' read A
AA669501.1 Clone 744818 testis 3' read
AA809482.1 Clone IMAGE:1338154 lymph node 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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