AT hook containing transcription factor 1 pseudogene 1 (AHCTF1P1)

Restricted Expression:

blastocyst [show more like this]

EST Profile:

Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]

GEO Profiles:

Experimental gene expression data (Gene Expression Omnibus).

cDNA Sources:

brain; testis; uterus; eye; embryonic tissue; mammary gland; heart; placenta; thymus; kidney; uncharacterized tissue; connective tissue; liver; adipose tissue; ascites; mouth; muscle; pancreas; intestine; bone

NCBI

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Finding cDNAs

UGID:685594 UniGene Hs.470435 Homo sapiens (human) AHCTF1P1

Links

AT hook containing transcription factor 1 pseudogene 1 (AHCTF1P1)

Human pseudo gene AHCTF1P1. Represented by 50 ESTs from 38 cDNA libraries. EST representation biased toward blastocyst. Corresponds to reference sequence NR_077058.1. [UniGene 685594 - Hs.470435]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_056261.4 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	AHCTF1 gene product	H. sapiens	95.6	2274
NP_080651.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	Ahctf1 gene product	M. musculus	76.8	2241
NP_001086539.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	MGC83673 protein	X. laevis	68.9	1214
XP_697727.4 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein ELYS	D. rerio	66.9	1208
Other hits (2 of 18) [Show all]		Species	Id(%)	Len(aa)
XP_514319.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: LOW QUALITY PROTEIN: protein ELYS	P. troglodytes	94.5	2271
XP_001088135.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: protein ELYS isoform 3	M. mulatta	92.4	2273

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	2
	Map position:	2q24.2

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	AK057394.1	Homo sapiens cDNA FLJ32832 fis, clone TESTI2003196	P
	NR_077058.1	Homo sapiens AT hook containing transcription factor 1 pseudogene 1 (AHCTF1P1), non-coding RNA	A

EST sequences (50)

CB156576.1	Clone B2N807043-18-E09	brain	5' read	P
CB270014.1		adipose tissue	5' read	P
CD558125.1	Clone IMAGE:30390011	testis	5' read	P
CD643434.1	Clone IMAGE:30427258	embryonic tissue	5' read	P
CD653243.1	Clone IMAGE:30422419	embryonic tissue	5' read	P
CD653816.1	Clone IMAGE:30422155	embryonic tissue	5' read	P
CD657737.1	Clone IMAGE:30422691	embryonic tissue	5' read	P
CN353243.1		embryonic tissue	5' read	P
CN370416.1		embryonic tissue	5' read	P
BE066215.1		mammary gland		P
BE142859.1		mouth
BP250661.1	Clone HPR04515	brain	5' read	P
BP314554.1	Clone OFR06507	mammary gland	5' read	P
BE779524.1	Clone IMAGE:3867738	eye	5' read	P
BE886672.1	Clone IMAGE:3909391	uterus	5' read	P
BF096038.1		uterus		P
BF096041.1		uterus		P
BF096053.1		uterus		P
DA219117.1	Clone BRAWH3010486	brain	5' read	P
DA503142.1	Clone FCBBF3017918	brain	5' read	P
DA488585.1	Clone FCBBF2007095	brain	5' read	P
DA729952.1	Clone NT2RM2004183	testis	5' read	P
DB022302.1	Clone TESTI2003196	testis	5' read	P
DA825327.1	Clone PERIC2006398	heart	5' read	P
DA756039.1	Clone NT2RP8002634	testis	5' read	P
DA756646.1	Clone NT2RP8003486	testis	5' read	P
DA717662.1	Clone NT2RI2025614		5' read	P
DA829853.1	Clone PLACE1003949	placenta	5' read	P
DA724304.1	Clone NT2RI3005663	testis	5' read	P
DB374799.1	Clone PLACE1003949	placenta	3' read	P
DB336058.1	Clone TESTI2003196	testis	3' read	PA
DB266957.1	Clone UTERU2026903	uterus	5' read	P
DB116182.1	Clone THYMU2022292	thymus	5' read	P
DB078669.1	Clone TESTI4023594	testis	5' read	P
BF911918.1		uterus		P
BG163627.1	Clone IMAGE:4446957	kidney	5' read	P
AL522811.3	Clone CS0DB009YJ03	uncharacterized tissue	5' read	P
BG623160.1	Clone IMAGE:4769750	placenta	5' read	P
BG213554.1		connective tissue		P
BJ989514.1	Clone hkmt-0100	liver	5' read	P
BM796721.1	Clone S22SNU16n1-63-B05	ascites	5' read	P
BM836605.1	Clone S9SNU601-89-A09	ascites	5' read	P
AL703722.1	Clone DKFZp686E2027	muscle	5' read
BQ230400.1	Clone IMAGE:6060643	pancreas	5' read	P
BQ325067.1		intestine
BQ378910.1		uterus		P
BQ378911.1		uterus
BQ379002.1		uterus		P
BG118480.1	Clone IMAGE:4443361	liver	5' read	P
BU622059.1	Clone UI-H-FH1-bft-p-15-0-UI	bone	3' read	PA

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria