> Vacuolar protein sorting 53 homolog (S. cerevisiae) (VPS53)
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UGID:676978     UniGene Hs.461819     Homo sapiens (human)   VPS53 Order cDNA clone, Links
Vacuolar protein sorting 53 homolog (S. cerevisiae) (VPS53)

Human protein-coding gene VPS53. Represented by 296 ESTs from 168 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 676978 - Hs.461819]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001121631.1 VPS53 gene product H. sapiens 100.0 831
XP_001151796.1 PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 3 P. troglodytes 100.0 698
NP_080940.2 Vps53 gene product M. musculus 97.8 831
NP_001007459.2 vacuolar protein sorting 53 homolog D. rerio 93.5 830
NP_001084941.1 40S ribosomal protein S4 X. laevis 91.8 98
NP_608825.2 CG3338 D. melanogaster 55.5 797
NP_001255028.1 Protein VPS-53, isoform b C. elegans 49.4 172
Other hits (2 of 43) [Show all]SpeciesId(%)Len(aa)
XP_003912085.1 PREDICTED: vacuolar protein sorting-associated protein 53 homolog P. anubis 99.4 831
XP_548308.2 PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform 1 C. lupus familiaris 98.9 831

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; cervix; kidney; mixed; lung; stomach; uncharacterized tissue; intestine; bladder; trachea; liver; umbilical cord; thymus; blood; vascular; connective tissue; uterus; mouth; spleen; eye; pancreas; embryonic tissue; mammary gland; prostate; placenta; skin; lymph node; ovary; muscle; larynx; heart; lymph; ascites; thyroid; nerve; salivary gland; bone; bone marrow; pineal gland; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p13.3
UniSTS entry: Chr 17 STS-R19362 [Map Viewer]
UniSTS entry: Chr 17 D1S2511
UniSTS entry: Chr 17 RH11875
UniSTS entry: Chr 17 WI-14673 [Map Viewer]
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 L17809
UniSTS entry: Chr 17 A006Y45
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 RH36905
UniSTS entry: Chr 1 D3S1673
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (23)

AK128440.1 Homo sapiens cDNA FLJ46583 fis, clone THYMU3043482
AK123107.1 Homo sapiens cDNA FLJ41112 fis, clone BRACE1000239
AK001841.1 Homo sapiens cDNA FLJ10979 fis, clone PLACE1001503 P
AY444797.1 Homo sapiens vacuolar sorting protein 53 long isoform (VPS53) mRNA, complete cds, alternatively spliced PA
NM_018289.3 Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae) (VPS53), transcript variant 2, mRNA P
AF246287.1 Homo sapiens clone C63R unknown mRNA P
BC006116.1 Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae), mRNA (cDNA clone MGC:12993 IMAGE:3504453), complete cds PA
AK057942.1 Homo sapiens cDNA FLJ25213 fis, clone REC08168
AK056323.1 Homo sapiens cDNA FLJ31761 fis, clone NT2RI2007751
AK290343.1 Homo sapiens cDNA FLJ76086 complete cds P
EU434650.1 Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced P
EU434649.1 Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced P
EU434648.1 Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced P
BC029560.1 Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4838620), complete cds PA
EU021218.1 Homo sapiens Vps53 long isoform mRNA, complete cds, alternatively spliced PA
NM_001128159.2 Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae) (VPS53), transcript variant 1, mRNA PA
AK092532.1 Homo sapiens cDNA FLJ35213 fis, clone PROST1000215, highly similar to Vacuolar protein sorting protein 53 P
AK091388.1 Homo sapiens cDNA FLJ34069 fis, clone FCBBF3001924 P
AF318335.1 Homo sapiens pp13624 mRNA, complete cds PA
AF085927.1 Homo sapiens full length insert cDNA clone YR50A02 A
AK299543.1 Homo sapiens cDNA FLJ61757 complete cds
BC039432.1 Homo sapiens cDNA clone IMAGE:5303499 A
BC040223.1 Homo sapiens vacuolar protein sorting 53 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5180083), containing frame-shift errors PA

EST sequences (296)

AA984563.1 Clone IMAGE:1630262 brain 3' read
AA991384.1 Clone IMAGE:1608940 mammary gland 3' read A
AA994912.1 Clone IMAGE:1626928 mixed 3' read
R19359.1 Clone IMAGE:129881 mixed 3' read
R19362.1 Clone IMAGE:129887 mixed 3' read A
AI124779.1 Clone IMAGE:1539546 brain 3' read
BX094584.1 Clone IMAGp998E01613_;_IMAGE:277608 brain
BX110126.1 Clone IMAGp998H02734_;_IMAGE:324145 skin A
AI191973.1 Clone IMAGE:1738284 testis 3' read
AI214342.1 Clone IMAGE:1837105 testis 3' read
AI219542.1 Clone IMAGE:1844579 mixed 3' read P
AA897250.1 Clone IMAGE:1466107 mixed 3' read A
AI286171.1 Clone IMAGE:1855262 mixed 3' read P
AI292079.1 Clone IMAGE:1895318 lung 3' read A
R37005.1 Clone IMAGE:27003 brain 3' read A
AF026163.1 Clone A1 uncharacterized tissue
AI524798.1 Clone IMAGE:2138058 kidney 3' read
AI525110.1 prostate 5' read
AI399858.1 Clone IMAGE:2113485 mixed 3' read
AI651449.1 Clone IMAGE:2298825 kidney 3' read
AI658633.1 Clone IMAGE:2250285 prostate 3' read A
AI692376.1 Clone IMAGE:2336299 lung 3' read
AI761086.1 Clone IMAGE:2398594 kidney 3' read
R60485.1 Clone IMAGE:42835 brain 5' read
R61268.1 Clone IMAGE:42770 brain 5' read
BX281613.1 Clone IMAGp998O0510772_;_IMAGE:4838620 testis P
Z41988.1 Clone c-05a10 brain
Z38272.1 Clone c-05a10 brain
CB851054.1 Clone UI-CF-EN1-adh-h-22-0-UI lung 3' read A
BX459954.2 Clone CS0DF008YH06 brain 3' read P
AI984664.1 Clone IMAGE:2494417 kidney 3' read A
AI991461.1 Clone IMAGE:2496797 kidney 3' read
AW008399.1 Clone IMAGE:2533390 stomach 3' read A
AW014459.1 Clone IMAGE:2709406 uncharacterized tissue 3' read A
BX474170.1 Clone DKFZp686N02167 muscle 5' read P
BX481457.1 Clone DKFZp686D01226 muscle 5' read A
BX488493.1 Clone DKFZp686N17270 muscle 5' read P
BX493153.1 Clone DKFZp781G232 uncharacterized tissue 5' read
BX507976.1 Clone DKFZp686P02262 muscle 5' read
AW087434.1 Clone IMAGE:2582752 intestine 3' read A
CF142706.1 Clone IMAGE:3100907 lymph node 5' read
CF146855.1 Clone IMAGE:30570621 prostate 5' read
AU253529.1 Clone Nbla04301 brain 5' read
BX642909.1 Clone DKFZp781M101 uncharacterized tissue 5' read
BX642910.1 Clone DKFZp781M101 uncharacterized tissue 3' read A
AL135383.1 Clone DKFZp762G0915 skin 5' read
AW298410.1 Clone IMAGE:2732054 uncharacterized tissue 3' read A
AW390210.1 stomach P
AW408676.1 Clone IMAGE:3062772 lymph node 5' read P
AW449261.1 Clone IMAGE:2734131 uncharacterized tissue 3' read A
AW451132.1 Clone IMAGE:2736994 uncharacterized tissue 3' read A
AW501719.1 Clone IMAGE:3074887 lymph node 5' read
AW502907.1 Clone IMAGE:3073074 lymph node 5' read
AW502911.1 Clone IMAGE:3073112 lymph node 5' read
AW517316.1 Clone IMAGE:2747902 cervix 3' read
AW573111.1 Clone IMAGE:2933584 mixed 3' read PA
AW578213.1 intestine
AW627923.1 Clone IMAGE:2974354 mixed 3' read A
AW732294.1 Clone IMAGE:2958270 kidney 5' read
CK903507.1 Clone IMAGE:5671167 pancreas 3' read
CK903508.1 Clone IMAGE:5671167 pancreas 5' read A
AW876452.1 uncharacterized tissue
AW881268.1 ovary P
AW884339.1 ovary
AW897643.1 brain
CN478457.1 Clone UI-E-DW1-agz-d-19-0-UI eye 3' read A
CN265138.1 embryonic tissue 5' read
CN282481.1 embryonic tissue 5' read P
CN413884.1 embryonic tissue 5' read
AW970186.1 uncharacterized tissue
BE048378.1 Clone IMAGE:3131529 kidney 3' read A
H11121.1 Clone IMAGE:48199 brain 3' read P
H11226.1 Clone IMAGE:48199 brain 5' read P
BE089329.1 mammary gland
BE089330.1 mammary gland
BE089343.1 mammary gland
H20206.1 Clone IMAGE:172392 brain 5' read
CV024763.1 mixed 5' read P
CV026937.1 mixed 5' read P
BE312907.1 Clone IMAGE:3509613 brain 5' read P
BP252972.1 Clone HRC02473 kidney 5' read P
BE280338.1 Clone IMAGE:3504453 placenta 5' read P
BP312762.1 Clone OFR01034 mammary gland 5' read P
BP281060.1 Clone KGR09579 brain 5' read P
BE327199.1 Clone IMAGE:3182346 lung 3' read A
BE349542.1 Clone IMAGE:3150646 skin 3' read A
CV569299.1 Clone od03g08 eye 5' read P
BE467416.1 Clone IMAGE:3212865 lung 3' read
BE501738.1 Clone IMAGE:3184829 kidney 3' read A
BE551045.1 Clone IMAGE:3233342 lung 3' read
H40074.1 Clone IMAGE:174723 brain 5' read
H40087.1 Clone IMAGE:174773 brain 5' read
CX758943.1 Clone IMAGE:7769236 embryonic tissue 3' read
CX866240.1 Clone IMAGE:7471865 embryonic tissue 5' read
CX867106.1 Clone IMAGE:7472323 embryonic tissue 5' read A
BE720385.1 larynx P
BE720428.1 larynx
BE765453.1 brain
BE780041.1 Clone IMAGE:3872955 eye 5' read
BE788284.1 Clone IMAGE:3884681 lung 5' read P
BE872896.1 Clone IMAGE:3854679 intestine 5' read
DN990636.1 Clone TC101587 brain 5' read
DN991546.1 Clone TC125086 brain 5' read
DN996348.1 Clone TC105990 mammary gland 5' read
BE930665.1 placenta
BE930668.1 placenta
BP425583.1 Clone HIE09289r intestine 3' read A
AV737767.1 Clone CBMAPA05 blood 5' read P
BF091448.1 testis P
DR760319.1 Clone IMAGE:7969770 embryonic tissue 5' read
BF115777.1 Clone IMAGE:3569444 lung 3' read
AU135220.1 Clone PLACE1001503 placenta 5' read P
H52151.1 Clone IMAGE:180821 brain 3' read
BF335008.1 intestine
BF351984.1 thyroid P
BF358728.1 lung
BF373192.1 prostate P
BF378231.1 uterus
BF447608.1 Clone IMAGE:3705920 lung 3' read
BF447677.1 Clone IMAGE:3705881 lung 3' read A
H63063.1 Clone IMAGE:208682 mixed 3' read
H63144.1 Clone IMAGE:208682 mixed 5' read
AA767287.1 Clone IMAGE:1301845 lymph node 3' read A
DA084505.1 Clone BRACE2038624 brain 5' read
DA079713.1 Clone BRACE2032634 brain 5' read P
DA170165.1 Clone BRAMY2032148 brain 5' read P
DA054015.1 Clone BRACE1000239 brain 5' read
DA061608.1 Clone BRACE2010193 brain 5' read P
DA140086.1 Clone BRALZ2014522 brain 5' read A
DA134025.1 Clone BRALZ2006476 brain 5' read
DA030954.1 Clone ASTRO2015265 brain 5' read P
DA107334.1 Clone BRACE3022045 brain 5' read
DA114313.1 Clone BRACE3032899 brain 5' read
DA122947.1 Clone BRACE3044649 brain 5' read P
DA497451.1 Clone FCBBF3010535 brain 5' read
DA654101.1 Clone MESAN2009102 kidney 5' read
DA498085.1 Clone FCBBF3011318 brain 5' read P
DA364458.1 Clone BRSTN2011765 brain 5' read
DA372216.1 Clone BRTHA2002398 brain 5' read
DA490652.1 Clone FCBBF3001924 brain 5' read P
DA485492.1 Clone FCBBF2002567 brain 5' read P
DA413483.1 Clone BRTHA3021459 brain 5' read
DA454209.1 Clone CTONG2027334 mouth 5' read P
DB040678.1 Clone TESTI2027547 testis 5' read P
DA842465.1 Clone PLACE6009912 placenta 5' read
DA955129.1 Clone SPLEN2033664 spleen 5' read P
AU155901.2 Clone PLACE1001503 placenta 3' read
DA799945.1 Clone OCBBF3003769 brain 5' read P
DA884674.1 Clone PUAEN2004577 vascular 5' read P
DA806158.1 Clone OCBBF3021479 brain 5' read P
DA704419.1 Clone NT2RI2007751 5' read
DA942991.1 Clone SPLEN2017736 spleen 5' read
DA865358.1 Clone PROST1000215 prostate 5' read P
DA950917.1 Clone SPLEN2028067 spleen 5' read P
DA796387.1 Clone OCBBF2037600 brain 5' read
DB296427.1 Clone BRACE1000239 brain 3' read A
DB298051.1 Clone BRACE2038624 brain 3' read A
DB069967.1 Clone TESTI4012358 testis 5' read
DB383343.1 Clone VESEN2000051 umbilical cord 3' read
DB149802.1 Clone THYMU3026239 thymus 5' read P
BF737290.1 bladder
DB312659.1 Clone BRTHA3021459 brain 3' read A
DB315386.1 Clone FCBBF3001924 brain 3' read A
DB323901.1 Clone NT2RI2007751 3' read
DB089788.1 Clone TESTI4038485 testis 5' read
DB293407.1 Clone VESEN2000051 umbilical cord 5' read P
DB215168.1 Clone TRACH3003781 trachea 5' read P
DB300092.1 Clone BRACE3032899 brain 3' read A
DB301113.1 Clone BRALZ2006476 brain 3' read A
DB328497.1 Clone PLACE6009912 placenta 3' read A
DW436151.1 liver P
DW440555.1 liver
H92041.1 Clone IMAGE:221323 eye 5' read
BF979438.1 Clone IMAGE:4373874 testis 5' read P
BF980390.1 Clone IMAGE:4373874 testis 3' read
BF977720.1 Clone IMAGE:4307504 skin 5' read
BF954597.1 brain
BF894091.1 blood
DB442549.1 Clone H013004P22 testis 5' read P
DB486244.1 Clone H033011J23 brain 5' read
DB447557.1 Clone H013031N14 testis 5' read
DB524133.1 Clone H013082M19 testis 3' read
DB474732.1 Clone H023064I20 brain 5' read
DB512579.1 Clone H013031N14 testis 3' read
DB543565.1 Clone H023064I20 brain 3' read A
DB458631.1 Clone H013082M19 testis 5' read P
BG288724.1 Clone IMAGE:4514218 bladder 5' read
EC493888.1 prostate
BG385797.1 Clone IMAGE:4582423 intestine 5' read
BG503328.1 Clone IMAGE:4658481 testis 5' read
BG531287.1 Clone IMAGE:4697357 testis 5' read
N49378.1 Clone IMAGE:277608 brain 3' read A
BG577387.1 Clone IMAGE:4708297 mammary gland 5' read
BG184395.1 connective tissue PA
BG190714.1 connective tissue P
BG203513.1 connective tissue
BG220238.1 connective tissue PA
BG221198.1 connective tissue PA
BG772162.1 Clone IMAGE:4838620 testis 5' read P
BG913717.1 Clone IMAGE:4943551 brain 5' read
BI045931.1 prostate
BI009841.1 kidney
BG939717.1 Clone HBMSC_cr61b03 bone marrow 3' read A
BG946128.1 bladder
N85022.1 Clone J1935 heart 5' read
DC374581.1 Clone OCBBF2008511 brain 5' read
DC426400.1 Clone OCBBF2008511 brain 3' read A
DC374772.1 Clone OCBBF2011205 brain 5' read
DC374188.1 Clone OCBBF2003272 brain 5' read
DC316292.1 Clone BRAMY2040831 brain 5' read
BI666793.1 Clone IMAGE:5310991 brain 5' read
BI597073.1 Clone IMAGE:5303499 brain 5' read
N92657.1 Clone IMAGE:289388 brain 3' read
BI823279.1 Clone IMAGE:5180083 mixed 5' read
N99603.1 Clone IMAGE:289386 brain 5' read
BI859806.1 Clone IMAGE:5395059 mammary gland 5' read
BI963255.1 Clone IMAGE:5671167 pancreas 3' read
BM264094.1 pancreas 3' read
BM264400.1 pancreas 5' read
BM458016.1 Clone IMAGE:5530355 uterus 5' read
BM467495.1 Clone IMAGE:5505465 lymph 5' read
BM467821.1 Clone IMAGE:5532714 uterus 5' read P
BM663612.1 Clone UI-E-CI1-abb-h-11-0-UI eye 3' read A
BM674249.1 Clone UI-E-EJ0-ahj-h-04-0-UI eye 3' read A
BM676231.1 Clone UI-E-EJ0-ahj-a-11-0-UI eye 3' read A
BI481285.1 eye 5' read P
BM687113.1 Clone UI-E-CQ1-acy-g-01-0-UI brain 5' read
BM691136.1 Clone UI-E-CI1-abb-h-11-0-UI eye 5' read
BM699815.1 Clone UI-E-DW1-agz-d-19-0-UI eye 5' read
W46635.1 Clone IMAGE:324145 skin 3' read
W46682.1 Clone IMAGE:324145 skin 5' read
BM715665.1 Clone UI-E-EJ0-ahj-a-11-0-UI eye 5' read
BM715934.1 Clone UI-E-EJ0-ahj-h-04-0-UI eye 5' read
BM762133.1 Clone S13KMS5-10-A06 stomach 5' read
BM783166.1 Clone S18N669761-3-E09 stomach 5' read A
BM796553.1 Clone S22SNU16n1-69-A03 ascites 5' read
BM797690.1 Clone S22SNU16n1-80-C05 ascites 5' read
BM797752.1 Clone S22SNU16n1-79-B04 ascites 5' read
BM925550.1 Clone IMAGE:5763747 brain 5' read
BM982808.1 Clone UI-CF-EN1-acr-f-19-0-UI lung 3' read A
BM982828.1 Clone UI-CF-EN1-acr-j-19-0-UI lung 3' read A
AL701573.1 Clone DKFZp686A08145 muscle 5' read P
AL709836.1 Clone DKFZp686B0864 muscle 5' read
BM990101.1 Clone IMAGE:5862387 lung 3' read A
BM991403.1 Clone IMAGE:5857678 connective tissue 3' read PA
BQ001981.1 Clone IMAGE:5823051 connective tissue 3' read PA
BQ008507.1 Clone IMAGE:5839842 connective tissue 3' read A
BQ100796.1 Clone IMAGE:6135735 pancreas 3' read
BQ101085.1 Clone IMAGE:6135735 pancreas 5' read A
BQ301480.1 thyroid
BQ336202.1 blood
BQ423824.1 Clone IMAGE:6160461 skin 5' read A
BQ440533.1 Clone IMAGE:6155626 uterus 5' read P
BQ648684.1 Clone IMAGE:6269692 liver 5' read
BF918870.1 brain
BF924512.1 brain
BF927646.1 brain
BM931789.1 Clone UI-E-EJ1-ajk-b-09-0-UI eye 5' read A
BQ934744.1 Clone IMAGE:6205521 nerve 5' read A
BQ940763.1 Clone IMAGE:6374664 lung 5' read
BU509574.1 Clone IMAGE:6504190 uterus 5' read
BU186117.1 Clone IMAGE:6087031 salivary gland 5' read P
BU533303.1 Clone IMAGE:6559597 mixed 5' read A
W26592.1 eye
FN122217.1 Clone 176716_1308_1013
AA157537.1 Clone IMAGE:590810 pancreas 3' read
BY997448.1 Clone MCT1804 5' read
AA203496.1 Clone IMAGE:446725 mixed 5' read
AA216226.1 heart 5' read
AA228745.1 Clone IMAGE:1008103 prostate
BU727568.1 Clone UI-E-CQ1-acy-g-01-0-UI brain 3' read A
BU839721.1 Clone IMAGE:6285896 liver 5' read
HY016090.1 Clone H04D055B21 testis P
HY025567.1 Clone H04D087G13 testis P
HY031943.1 Clone H04D110I21 testis P
HY199250.1 Clone H04D055B21 testis
HY216489.1 Clone H04D110I21 testis P
CA308305.1 Clone UI-H-FT1-bhz-a-06-0-UI lung 3' read PA
AA281793.1 Clone IMAGE:712610 lymph node 3' read A
CA425979.1 Clone UI-H-DF0-bej-c-23-0-UI bone 3' read
CA430389.1 Clone UI-H-DF0-bev-m-16-0-UI bone 3' read A
CA844347.1 Clone IMAGE:6607710 pancreas 3' read A
CA848911.1 Clone IMAGE:6607734 pancreas 3' read A
CA849090.1 Clone IMAGE:6607734 pancreas 5' read
CA868513.1 Clone IMAGE:6608969 pancreas 3' read
AA364445.1 pineal gland 5' read
T88961.1 Clone IMAGE:116142 mixed 5' read
AA503928.1 Clone IMAGE:954602 prostate A
AA514634.1 Clone IMAGE:924506 intestine 3' read A
AA486881.1 Clone IMAGE:841025 lung 5' read
AA564740.1 Clone IMAGE:1016795 uncharacterized tissue 3' read
AA649721.1 Clone IMAGE:1186734 muscle
AA731548.1 Clone IMAGE:1251332 lymph node 3' read
R11460.1 Clone IMAGE:129881 mixed 5' read
AA890687.1 Clone IMAGE:1404063 parathyroid 3' read
R13863.1 Clone IMAGE:27003 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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