> RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) (RRN3)
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UGID:675237     UniGene Hs.460078     Homo sapiens (human)   RRN3 Order cDNA clone, Links
RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) (RRN3)

Human protein-coding gene RRN3. Represented by 228 ESTs from 145 cDNA libraries. Corresponds to reference sequence NM_018427.3. [UniGene 675237 - Hs.460078]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060897.3 RRN3 gene product H. sapiens 100.0 650
XP_001143837.2 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform 1 P. troglodytes 100.0 551
NP_001034610.1 RNA polymerase I-specific transcription initiation factor RRN3 M. musculus 91.8 655
NP_001107876.1 RRN3 RNA polymerase I transcription factor homolog X. laevis 76.7 609
XP_706962.2 PREDICTED: hypothetical protein isoform 2 D. rerio 69.3 603
Other hits (2 of 29) [Show all]SpeciesId(%)Len(aa)
XP_001108222.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform 2 M. mulatta 98.9 650
XP_003916620.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform 1 P. anubis 98.9 650

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; skin; blood; muscle; mammary gland; eye; intestine; bone marrow; thyroid; liver; mixed; lung; lymph node; placenta; pituitary gland; ear; pancreas; embryonic tissue; uncharacterized tissue; uterus; mouth; connective tissue; ovary; heart; trachea; adrenal gland; bladder; salivary gland; prostate; vascular; bone; thymus; ascites; cervix; kidney; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16p12
UniSTS entry: RH103343
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

AL110238.1 Homo sapiens mRNA; cDNA DKFZp566E104 (from clone DKFZp566E104)
BC071868.1 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:6278263), partial cds PA
NM_018427.3 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) (RRN3), mRNA PA
AF227156.1 Homo sapiens RRN3 mRNA, complete cds P
AJ272050.1 Homo sapiens mRNA for transcription initiation factor IA protein (TIF-IA gene) PA
BC104660.1 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:4612605), complete cds PA
AK225662.1 Homo sapiens mRNA for RRN3 RNA polymerase I transcription factor homolog, clone: STM04189 PA
BC132690.1 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae), mRNA (cDNA clone MGC:164321 IMAGE:40146712), complete cds P
BC132688.1 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae), mRNA (cDNA clone MGC:164319 IMAGE:40146710), complete cds P
AK314769.1 Homo sapiens cDNA, FLJ95638, Homo sapiens RNA polymerase I transcription factor RRN3 (RRN3),mRNA P
AK092795.1 Homo sapiens cDNA FLJ35476 fis, clone SMINT2007579
AK300253.1 Homo sapiens cDNA FLJ50670 complete cds, highly similar to RNA polymerase I-specific transcription initiation factor RRN3 P
AK304856.1 Homo sapiens cDNA FLJ53965 complete cds, highly similar to RNA polymerase I-specific transcription initiation factor RRN3 P
AK303405.1 Homo sapiens cDNA FLJ52380 complete cds, highly similar to RNA polymerase I-specific transcriptioninitiation factor RRN3 P
AK302994.1 Homo sapiens cDNA FLJ55505 complete cds, highly similar to RNA polymerase I-specific transcription initiation factor RRN3 P
AK295486.1 Homo sapiens cDNA FLJ56083 complete cds, highly similar to RNA polymerase I-specific transcriptioninitiation factor RRN3 P
AK316520.1 Homo sapiens cDNA, FLJ79419 complete cds, highly similar to RNA polymerase I-specific transcription initiation factor RRN3 P
BC036182.1 Homo sapiens RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:5298581) PA

EST sequences (228)

AA987540.1 Clone IMAGE:1605078 lung 3' read
AA910710.1 Clone IMAGE:1521180 lung 3' read A
AA911105.1 Clone IMAGE:1519064 uncharacterized tissue 3' read A
R17814.1 Clone IMAGE:31871 brain 5' read
AI050780.1 Clone IMAGE:1637070 kidney 3' read A
AI217698.1 Clone IMAGE:1844762 mixed 3' read
CB150625.1 Clone C1SNU17-32-D03 cervix 5' read P
CB148063.1 Clone L9SNU354-17-D09 liver 5' read
AA928080.1 Clone IMAGE:1563546 mixed 3' read A
AI381593.1 Clone IMAGE:2074787 uncharacterized tissue 3' read
AI383715.1 Clone IMAGE:2067743 embryonic tissue 3' read A
AI417029.1 Clone IMAGE:2114868 mixed 3' read A
CB217051.1 Clone IMAGE:5938800 uterus 5' read
AI470319.1 Clone IMAGE:2144145 mixed 3' read A
AI581662.1 Clone IMAGE:2174083 intestine 3' read A
AI582687.1 Clone IMAGE:2167795 brain 3' read A
AI699395.1 Clone IMAGE:2301437 mixed 3' read A
CB242660.1 Clone UI-CF-FN0-afs-k-14-0-UI lung 3' read A
BX281597.1 Clone IMAGp998G2212484_;_IMAGE:5636397 pancreas P
BX282436.1 Clone IMAGp998P1813334_;_IMAGE:6062849 skin P
AI372822.1 Clone FUHIBU1 brain
AI372823.1 Clone FUHIBU1 brain
CB986285.1 Clone IMAGE:30329925 mixed 5' read
AI814960.1 Clone IMAGE:2420633 pancreas 3' read A
CD000464.1 Clone IMAGE:30321780 mixed 5' read
CD107244.1 Clone IMAGE:30366443 pituitary gland 5' read
CD171798.1 Clone IMAGE:30378953 testis 5' read P
CD359064.1 Clone IMAGE:30389999 testis 5' read P
AW015483.1 Clone IMAGE:2710412 uncharacterized tissue 3' read P
AW023187.1 Clone IMAGE:2486919 ear 5' read
BX477835.1 Clone DKFZp686A23199 muscle 5' read
AW085184.1 Clone IMAGE:2606373 mixed 3' read A
AW087618.1 Clone IMAGE:2581278 mixed 3' read
CF138025.1 Clone IMAGE:3093391 lymph node 5' read A
CF138931.1 Clone IMAGE:3095208 lymph node 5' read P
AW149757.1 Clone IMAGE:2620677 brain 3' read A
AW193486.1 Clone IMAGE:2680565 pancreas 3' read A
BX645355.1 Clone DKFZp781F0941 uncharacterized tissue 5' read
AW239267.1 Clone IMAGE:2578543 lung 5' read P
D20783.1 Clone mp2069 blood 3' read
AW408066.1 Clone IMAGE:3062754 lymph node 5' read P
CK906270.1 Clone IMAGE:5674911 pancreas 5' read A
R82817.1 Clone IMAGE:148937 placenta 5' read
AW957403.1 uncharacterized tissue
CN386202.1 embryonic tissue 5' read P
CN386204.1 embryonic tissue 5' read P
CN386205.1 embryonic tissue 5' read
CN386206.1 embryonic tissue 5' read
CN386207.1 embryonic tissue 5' read P
BE086903.1 mammary gland
BE087653.1 mammary gland
H18482.1 Clone IMAGE:171817 brain 3' read A
BE177092.1 thyroid
H19252.1 Clone IMAGE:171834 brain 5' read
BE242261.1 Clone TCAAP1543 bone marrow
BE251086.1 Clone IMAGE:3343288 eye 5' read
BE255762.1 Clone IMAGE:3350913 eye 5' read
BP221053.1 Clone COL06833 intestine 5' read
BP240664.1 Clone HEP12565 liver 5' read P
BP313684.1 Clone OFR03923 mammary gland 5' read P
BP325939.1 Clone PRS00583 prostate 5' read P
BP359065.1 Clone TDR07811 mammary gland 5' read P
BP361804.1 Clone THR06618 brain 5' read
BP258036.1 Clone HRT02457 heart 5' read P
CV569937.1 Clone od11c03 eye 5' read
AV649508.1 Clone GLCBUF10 liver 3' read P
AV652360.2 Clone GLCCZE09 liver 3' read
AV652710.1 Clone GLCDDC05 liver 3' read
BE614096.1 Clone IMAGE:3905600 uterus 5' read P
BE702420.1 brain
BE734354.1 Clone IMAGE:3840623 placenta 5' read P
BE817561.1 mammary gland
BE817567.1 mammary gland
BE818092.1 mammary gland
AV700221.1 Clone GKBAKE08 liver 3' read A
BE870692.1 Clone IMAGE:3852342 intestine 5' read P
BE879147.1 Clone IMAGE:3892458 lung 5' read
DN989424.1 Clone TC100212 brain 5' read P
D62684.1 Clone GEN-314B04 vascular 5' read
BE965945.2 Clone IMAGE:3905600 uterus 3' read A
BF037133.1 Clone IMAGE:3860466 ovary 5' read
AV747820.1 Clone NPCCQE04 pituitary gland 5' read
BF132256.1 Clone IMAGE:4051881 kidney 5' read
BY799377.2 Clone HE4436.seq eye 5' read
AA737194.1 Clone IMAGE:1250088 bone
DN913702.1 Clone MCF7_RNA_L_17_H05 mammary gland
DN913703.1 Clone MCF7_RNA_L_17_H05 mammary gland
BF665293.1 Clone IMAGE:4275921 brain 5' read
BF673357.1 Clone IMAGE:4272413 prostate 5' read
DA348829.1 Clone BRSSN2010794 brain 5' read P
DA093862.1 Clone BRACE3002918 brain 5' read
DA110858.1 Clone BRACE3028065 brain 5' read P
DA113396.1 Clone BRACE3031636 brain 5' read P
DA121834.1 Clone BRACE3043118 brain 5' read P
DA354945.1 Clone BRSSN2019087 brain 5' read P
DA505251.1 Clone FCBBF3020709 brain 5' read P
DA656733.1 Clone MESAN2012495 kidney 5' read P
DA512433.1 Clone FCBBF5000385 brain 5' read
AW612846.1 Clone IMAGE:2957126 intestine 3' read A
AV720024.1 Clone GLCDDC05 liver 5' read A
AV720082.1 Clone GLCCZE09 liver 5' read
DA501607.1 Clone FCBBF3015918 brain 5' read P
DA764092.1 Clone NTONG2004475 mouth 5' read P
DA734662.1 Clone NT2RP2005674 testis 5' read P
DB044860.1 Clone TESTI2032926 testis 5' read P
DB038476.1 Clone TESTI2024754 testis 5' read
BF438019.1 Clone IMAGE:3703193 lung 3' read A
DA778894.1 Clone OCBBF2013647 brain 5' read P
DA779398.1 Clone OCBBF2014316 brain 5' read P
DA752741.1 Clone NT2RP7018836 testis 5' read P
DA831666.1 Clone PLACE1007520 placenta 5' read P
DA720231.1 Clone NT2RI3000302 testis 5' read P
DA833425.1 Clone PLACE1011135 placenta 5' read
DA990350.1 Clone SYNOV4001905 connective tissue 5' read P
DA796464.1 Clone OCBBF2037715 brain 5' read P
DB068815.1 Clone TESTI4010852 testis 5' read P
DB069629.1 Clone TESTI4011911 testis 5' read
DB337638.1 Clone TESTI2024754 testis 3' read
DB265625.1 Clone UTERU2025008 uterus 5' read P
DB377441.1 Clone PLACE1007520 placenta 3' read A
DB234147.1 Clone TRACH3028654 trachea 5' read P
DB236007.1 Clone TRACH3031162 trachea 5' read P
DB086290.1 Clone TESTI4033874 testis 5' read P
DB316379.1 Clone FCBBF5000385 brain 3' read A
DB089791.1 Clone TESTI4038489 testis 5' read P
DB366791.1 Clone NT2RP2005674 testis 3' read A
DB380153.1 Clone PLACE1011135 placenta 3' read A
BF834036.1 thyroid
BG035206.1 Clone IMAGE:4413050 liver 5' read
BF969032.1 Clone IMAGE:4358125 adrenal gland 5' read
BF914064.1 uterus
N22730.1 Clone IMAGE:266574 skin 3' read A
BG149493.1 Clone IMAGE:3366989 lung 3' read P
DB517543.1 Clone H013055M17 testis 3' read A
DB538570.2 Clone H023044K22 brain 3' read A
EB387709.1 Clone nbj34f03 brain 5' read P
DB564377.1 Clone H033051B03 brain 3' read
BG285565.1 Clone IMAGE:4498359 bladder 5' read
DB728060.1 Clone H013019H06 testis 3' read A
BG494996.1 Clone IMAGE:4672663 salivary gland 5' read
BG496106.1 Clone IMAGE:4659363 salivary gland 5' read
BG501864.1 Clone IMAGE:4655054 testis 5' read P
BG502871.1 Clone IMAGE:4658071 testis 5' read P
BG528147.1 Clone IMAGE:4686513 salivary gland 5' read
BG532530.1 Clone IMAGE:4699797 testis 5' read
BG533619.1 Clone IMAGE:4700388 liver 5' read
BG535298.1 Clone IMAGE:4687546 lung 5' read
BG571398.1 Clone IMAGE:4720026 placenta 5' read
BG611364.1 Clone IMAGE:4738063 prostate 5' read P
BG623988.1 Clone IMAGE:4770590 placenta 5' read
N64403.1 Clone IMAGE:290270 brain 3' read A
BI254888.1 Clone IMAGE:5113455 cervix 5' read
DC296432.1 Clone SYNOV4006850 connective tissue 5' read P
DC308252.1 Clone BRACE3021129 brain 5' read P
DC330337.1 Clone BRHIP2006103 brain 5' read P
DC407364.1 Clone THYMU2039152 thymus 5' read P
DC401133.1 Clone TESTI4013370 testis 5' read P
DC404079.1 Clone TESTI4047572 testis 5' read P
DC408755.1 Clone THYMU3017787 thymus 5' read P
DC365458.1 Clone NOVAR2002852 ovary 5' read P
DC323662.1 Clone BRAWH3032344 brain 5' read P
N90828.1 Clone IMAGE:290270 brain 5' read
BM127390.1 Clone IMAGE:5674911 pancreas 3' read A
BM127697.1 Clone IMAGE:5674911 pancreas 5' read A
BM511984.1 Clone IMAGE:5636651 pancreas 3' read
BM512378.1 Clone IMAGE:5636397 pancreas 3' read A
BM564978.1 Clone IMAGE:5636397 pancreas 5' read P
BM669552.1 Clone UI-E-DX1-agw-c-05-0-UI eye 3' read A
ES315912.1 skin
BM746086.1 Clone S4SNU1-11-E08 ascites 5' read
BM786521.1 Clone S9SNU601-38-F06 ascites 5' read P
BM820588.1 Clone S11SNU1-33-A03 ascites 5' read P
BM917888.1 Clone IMAGE:5485231 blood 5' read P
W84787.1 Clone IMAGE:415824 mixed 3' read
W84834.1 Clone IMAGE:415824 mixed 5' read
AL708034.1 Clone DKFZp686L104 muscle 5' read P
BQ009619.1 Clone IMAGE:5835498 connective tissue 3' read A
BQ067706.1 Clone IMAGE:5768454 brain 5' read
BQ214727.1 Clone IMAGE:6062849 skin 5' read P
BQ318425.1 intestine
BQ428460.1 Clone IMAGE:6176463 uterus 5' read
BQ638571.1 Clone hd25a12 eye 5' read P
BQ706249.1 Clone IMAGE:6278263 spleen 5' read
BM145479.1 Clone TCAAP5365 bone marrow A
BU176928.1 Clone IMAGE:6102813 testis 5' read A
BU151651.1 Clone IMAGE:6302422 spleen 5' read P
AA076229.1 Clone IMAGE:545182 ovary 3' read
AA088297.1 Clone IMAGE:511318 intestine 3' read A
AA089587.1 heart 5' read
C00522.1 uncharacterized tissue
FN118491.1 Clone 167192_1051_0469
FN144548.1 Clone 230578_1674_3725
FN105755.1 Clone 133763_3449_0281
FN052224.1 Clone 009254_1786_0870
BU568200.1 Clone IMAGE:6615160 testis 5' read
BU569881.1 Clone IMAGE:6617936 testis 5' read
BU598790.1 Clone IMAGE:6457713 mixed 5' read P
BY995397.1 Clone MCN1747 5' read P
BY996217.1 Clone MCT0573 5' read P
BY995969.1 Clone MCT0325 5' read P
BU625070.1 Clone UI-H-FG1-bgl-p-12-0-UI bone 3' read A
AA191100.1 Clone IMAGE:627052 cervix 3' read
AA191111.1 Clone IMAGE:627052 cervix 5' read P
AA213873.1 Clone IMAGE:683036 lymph node 5' read
BU676519.1 Clone UI-CF-DU1-aai-n-22-0-UI lung 3' read A
BU852220.1 Clone IMAGE:6617712 testis 5' read
BU928664.1 Clone IMAGE:6654577 brain 5' read
BU963786.1 Clone IMAGE:6745160 mixed 5' read
HY007681.1 Clone H04D026E14 testis P
HY053349.1 Clone H04D189C10 testis P
HY185633.1 Clone H04D007O18 testis
HY191584.1 Clone H04D026E14 testis
HY223505.1 Clone H04D132D08 testis
HY241284.1 Clone H04D189C10 testis
CA425750.1 Clone UI-H-FE1-beg-a-21-0-UI bone 3' read A
AA349191.1 brain 3' read A
AA349192.1 brain 5' read
AA370801.1 prostate 3' read A
AA371247.1 prostate 5' read
AA376316.1 lung 5' read P
AA426063.1 Clone IMAGE:757230 testis 3' read A
AA443853.1 Clone IMAGE:784093 embryonic tissue 3' read A
AA446643.1 Clone IMAGE:784093 embryonic tissue 5' read
AA481295.1 Clone IMAGE:746336 lymph node 5' read P
AA598711.1 Clone IMAGE:950217 lung 3' read A
AA701517.1 Clone IMAGE:435816 mixed 3' read A
AA765711.1 Clone IMAGE:1304488 lymph node 3' read
AA935798.1 Clone IMAGE:1557362 lung 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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