> Vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A)
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UGID:674949     UniGene Hs.459790     Homo sapiens (human)   VPS13A Links
Vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A)

Human protein-coding gene VPS13A. Represented by 198 ESTs from 113 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 674949 - Hs.459790]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_150648.2 VPS13A gene product H. sapiens 100.0 3173
XP_001148547.1 PREDICTED: vacuolar protein sorting-associated protein 13A isoform 3 P. troglodytes 99.8 3173
NP_766616.2 Vps13a gene product M. musculus 88.2 3165
NP_001112365.1 vacuolar protein sorting 13 homolog A D. rerio 64.1 3193
NP_001086434.1 vacuolar protein sorting 13 homolog A X. laevis 61.5 930
NP_610299.2 vacuolar protein sorting 13, isoform A D. melanogaster 58.3 362
NP_740899.1 Protein T08G11.1, isoform b C. elegans 55.8 403
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
XP_003911886.1 PREDICTED: vacuolar protein sorting-associated protein 13A, partial P. anubis 98.5 2335
XP_002808150.1 PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like M. mulatta 97.9 3173

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; mammary gland; intestine; adipose tissue; prostate; mixed; kidney; uncharacterized tissue; embryonic tissue; uterus; ascites; muscle; liver; pancreas; stomach; spleen; trachea; amniotic fluid; thymus; blood; connective tissue; ovary; eye; placenta; adrenal gland; thyroid; skin; lymph; bone; vascular; umbilical cord; pineal gland; lymph node; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 9
Map position: 9q21
UniSTS entry: Chr 9 D9S1768
UniSTS entry: Chr 9 SHGC-32427 [Map Viewer]
UniSTS entry: Chr 9 SHGC-30336 [Map Viewer]
UniSTS entry: Chr 9 AB055267
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BC041852.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:5270397), partial cds PA
AB023203.1 Homo sapiens mRNA for KIAA0986 protein, partial cds P
AK124024.1 Homo sapiens cDNA FLJ42030 fis, clone SPLEN2036953, highly similar to Vacuolar protein sorting 13A P
AJ626859.1 Homo sapiens mRNA for chorein 1D (VPS13A gene) P
AJ608769.1 Homo sapiens mRNA for chorein 2A (CHAC) protein, transcript variant 2A (VPS13A gene) P
AK000273.1 Homo sapiens cDNA FLJ20266 fis, clone HEP00615, highly similar to AB023203 Homo sapiens mRNA for KIAA0986 protein P
NM_001018038.2 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant D, mRNA PA
NM_001018037.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant C, mRNA P
AK022967.1 Homo sapiens cDNA FLJ12905 fis, clone NT2RP2004366, weakly similar to VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 P
AK027023.1 Homo sapiens cDNA: FLJ23370 fis, clone HEP15944 PA
AB054005.1 Homo sapiens chac mRNA for chorein, complete cds P
AF337532.1 Homo sapiens chorea-acanthocytosis (CHAC) mRNA, complete cds P
NM_033305.2 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant A, mRNA P
NM_015186.3 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae) (VPS13A), transcript variant B, mRNA PA
BC020576.1 Homo sapiens vacuolar protein sorting 13 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:3450315), partial cds PA

EST sequences (198)

AA954429.1 Clone IMAGE:1563457 mixed 3' read P
AA975192.1 Clone IMAGE:1555401 kidney 3' read
BX111825.1 Clone IMAGp998H07441_;_IMAGE:222006 eye P
AI216657.1 Clone IMAGE:1840088 testis 3' read
AI218624.1 Clone IMAGE:1753746 testis 3' read A
AI202451.1 Clone IMAGE:1943144 prostate 3' read P
CB131398.1 Clone L13SNU387-6-D06 liver 5' read
CB104862.1 Clone S9SNU601-38-D12 ascites 5' read
BM422911.1 testis
AI084224.1 Clone IMAGE:1671418 uncharacterized tissue 3' read A
AI279826.1 Clone IMAGE:1883015 lung 3' read
AI287913.1 Clone IMAGE:1964646 ovary 3' read A
AA770406.1 Clone 1321283 testis 3' read
AI474783.1 Clone IMAGE:2160222 kidney 3' read A
AI624765.1 Clone IMAGE:2231421 uterus 3' read A
AI621203.1 Clone IMAGE:2258178 stomach 3' read A
AI680723.1 Clone IMAGE:2272078 lung 3' read
AI689898.1 Clone IMAGE:2270709 lung 3' read
AI700589.1 Clone IMAGE:2343368 lung 3' read
AI719436.1 Clone IMAGE:2333501 intestine 3' read A
AI768588.1 Clone IMAGE:2381611 kidney 3' read A
CB267268.1 adipose tissue 5' read P
AI827786.1 Clone IMAGE:2357358 mixed 3' read
F00432.1 Clone 28C03 muscle
Z19438.1 Clone 28C03 muscle
AI935442.1 Clone IMAGE:2462050 kidney 3' read
CB984385.1 Clone IMAGE:30327100 mixed 5' read P
CD000144.1 Clone IMAGE:30324171 mixed 5' read P
CD109338.1 Clone IMAGE:30372680 mixed 5' read
AI984315.1 Clone IMAGE:2494650 kidney 3' read
CD299058.1 Clone IMAGE:30402980 vascular 5' read
CD359735.1 Clone IMAGE:30388779 testis 5' read P
BX474059.1 Clone DKFZp686B06167 muscle 5' read
CD653131.1 Clone IMAGE:30420794 embryonic tissue 5' read P
BX482354.1 Clone DKFZp686E24230 muscle 5' read P
BX483251.1 Clone DKFZp686H14235 muscle 5' read
BX494866.1 Clone DKFZp779B2116 liver 5' read P
F07287.1 Clone c-21c02 brain
Z41691.1 Clone c-21c02 brain 3' read A
AW189007.1 Clone IMAGE:2674774 uterus 3' read P
BX644113.1 Clone DKFZp781B0631 uncharacterized tissue 5' read P
BX646653.1 Clone DKFZp781P1090 uncharacterized tissue 5' read
AI905738.1 mammary gland
AW592056.1 Clone IMAGE:2934123 mixed 3' read
AW629014.1 Clone IMAGE:2975352 mixed 3' read A
R75670.1 Clone IMAGE:158859 mammary gland 5' read
R76963.1 Clone IMAGE:144180 placenta 5' read
AW812783.1 stomach
BX953849.1 Clone DKFZp781O054 uncharacterized tissue 5' read
BX955977.1 Clone DKFZp781C1575 uncharacterized tissue 5' read P
CK818729.1 Clone IMAGE:5675023 pancreas 5' read
AW936220.1 kidney
AW952429.1 uncharacterized tissue
CN291892.1 embryonic tissue 5' read
CN348731.1 embryonic tissue 5' read
CN421097.1 embryonic tissue 5' read P
CN421094.1 embryonic tissue 5' read P
CN421095.1 embryonic tissue 5' read P
CN421096.1 embryonic tissue 5' read P
AW974199.1 uncharacterized tissue
AW974205.1 uncharacterized tissue
H08632.1 Clone IMAGE:45076 brain 5' read
H08633.1 Clone IMAGE:45076 brain 3' read A
BE000322.1 mammary gland
BE043000.1 Clone IMAGE:3039009 lung 3' read
BE048433.1 Clone IMAGE:3131735 kidney 3' read
BE048479.1 Clone IMAGE:3131840 kidney 3' read A
CR736501.1 Clone IMAGp998D065777_;_IMAGE:2328917 mixed 5' read P
BE348288.1 Clone IMAGE:3183621 kidney 3' read A
BE348799.1 Clone IMAGE:3152134 lung 3' read
CV347040.1 intestine
BE542443.1 Clone IMAGE:3450315 placenta 5' read P
BE697156.1 intestine P
CX869627.1 Clone IMAGE:7474240 embryonic tissue 3' read A
CX869702.1 Clone IMAGE:7474240 embryonic tissue 5' read P
BP392453.1 Clone htp-03-68 pancreas 3' read
BP393865.1 Clone htp-47-59 pancreas 3' read A
BE768150.1 prostate P
BE768335.1 prostate
BE816011.1 mammary gland P
BE876134.1 Clone IMAGE:3888055 lung 5' read P
AU310544.1 Clone Nbla-23395 uncharacterized tissue 5' read P
AU310545.1 Clone Nbla-23395 uncharacterized tissue 3' read A
BE925955.1 mammary gland P
BF030906.1 Clone IMAGE:3828602 kidney 5' read
BF110043.1 Clone IMAGE:3567373 lung 3' read
AU128861.1 Clone NT2RP2004366 testis 5' read P
DN913765.1 Clone MCF7_RNA_L_17_I16 mammary gland
DA170596.1 Clone BRAMY2032662 brain 5' read
BF678308.1 Clone IMAGE:4249062 prostate 5' read A
BF678608.1 Clone IMAGE:4250323 prostate 5' read P
BF678624.1 Clone IMAGE:4249249 prostate 5' read
DA322679.1 Clone BRHIP3016429 brain 5' read P
DA094250.1 Clone BRACE3003480 brain 5' read P
DA212473.1 Clone BRAWH3001942 brain 5' read P
DA324347.1 Clone BRHIP3018833 brain 5' read P
DA102865.1 Clone BRACE3015648 brain 5' read
DA177669.1 Clone BRAMY2041615 brain 5' read P
DA027689.1 Clone ASTRO2011221 brain 5' read P
DA028926.1 Clone ASTRO2012793 brain 5' read P
DA113428.1 Clone BRACE3031677 brain 5' read P
DA113429.1 Clone BRACE3031678 brain 5' read P
DA153372.1 Clone BRAMY2011856 brain 5' read P
DA379934.1 Clone BRTHA2012938 brain 5' read P
DA622923.1 Clone KIDNE2002167 kidney 5' read P
DA389063.1 Clone BRTHA2025538 brain 5' read
AW301250.1 Clone IMAGE:2774918 kidney 3' read A
AW301542.1 Clone IMAGE:2775768 lung 3' read P
AW303378.1 Clone IMAGE:2813475 mixed 3' read
AW303478.1 Clone IMAGE:2813614 mixed 3' read
AV722064.1 Clone HTBAME05 brain 5' read P
DA644486.1 Clone LYMPB2001397 blood 5' read P
AU151085.1 Clone NT2RP2004366 testis 3' read P
DA961760.1 Clone SPLEN2042608 spleen 5' read P
DA957603.1 Clone SPLEN2036953 spleen 5' read P
DB298539.1 Clone BRACE3003480 brain 3' read P
DB232407.1 Clone TRACH3026306 trachea 5' read P
BF734926.1 amniotic fluid
DB188573.1 Clone TLIVE2008941 liver 5' read P
DB155408.1 Clone THYMU3033717 thymus 5' read P
DB090722.1 Clone TESTI4039774 testis 5' read P
DB202315.1 Clone TRACH2012406 trachea 5' read P
BF746089.1 mammary gland P
DB199838.1 Clone TRACH2008584 trachea 5' read P
H85547.1 Clone IMAGE:222006 eye 3' read
DB064369.1 Clone TESTI4005102 testis 5' read P
H85715.1 Clone IMAGE:219994 eye 5' read
DB099091.1 Clone TESTI4050727 testis 5' read P
DB072867.1 Clone TESTI4016078 testis 5' read
DB340339.1 Clone TESTI4016078 testis 3' read PA
DB138760.1 Clone THYMU3011083 thymus 5' read P
DB334063.1 Clone SPLEN2036953 spleen 3' read P
BF801459.1 intestine
DW420666.1 liver P
DW430767.1 liver
BF970842.1 Clone IMAGE:4359597 adrenal gland 5' read
BF898302.1 blood P
BF916468.1 uterus
BG055391.1 Clone IMAGE:3407375 lung 3' read
EB387114.1 Clone nbj25e06 brain 5' read A
EC469654.1 prostate
EC471250.1 prostate
EC483973.1 prostate
EC546839.1 prostate
BG499505.1 Clone IMAGE:4668250 prostate 5' read
BG614635.1 Clone IMAGE:4773007 testis 5' read
BG189714.1 connective tissue P
BG194885.1 connective tissue P
BG218234.1 connective tissue
BG220260.1 connective tissue P
BG986936.1 thyroid P
ES307595.1 skin 5' read
BI461030.1 Clone IMAGE:5270397 testis 5' read P
BM126642.1 Clone IMAGE:5675023 pancreas 3' read A
BM126912.1 Clone IMAGE:5675023 pancreas 5' read
BM477435.1 Clone IMAGE:5554243 lymph 5' read P
AJ430440.1 Clone C91-V63 uncharacterized tissue
BM800954.1 Clone IMAGE:5541297 skin 5' read A
BM837858.1 Clone S9SNU601-76-C10 ascites 5' read P
BM968882.1 Clone UI-CF-DU1-aal-m-18-0-UI lung 3' read A
AL710498.1 Clone DKFZp686H066 muscle 5' read P
BQ011213.1 Clone UI-1-BC1p-ayy-h-09-0-UI placenta 3' read A
BQ014814.1 Clone IMAGE:5833878 connective tissue 3' read A
BQ185252.1 Clone UI-E-EJ1-aju-g-20-0-UI eye 3' read A
BQ188074.1 Clone UI-E-EJ1-aju-g-20-0-UI eye 5' read
BQ315021.1 kidney
BQ773865.1 Clone UI-H-EZ1-bcb-a-17-0-UI bone 3' read PA
FN168186.1 Clone 283707_0306_2023
FN133115.1 Clone 203800_3907_2836
AA132420.1 Clone IMAGE:566970 umbilical cord 3' read
BU587314.1 Clone IMAGE:6385207 mixed 5' read A
BY994093.1 Clone MCN0443 5' read
AA228874.1 Clone IMAGE:1008233 prostate
AA229640.1 Clone IMAGE:1008137 prostate
BU685858.1 Clone UI-CF-DU1-adm-l-14-0-UI lung 3' read A
BU854510.1 Clone IMAGE:6621824 testis 5' read P
BU902765.1 Clone IMAGE:6528153 uterus 5' read P
HY035448.1 Clone H04D122J02 testis P
HY055525.1 Clone H04D196I01 testis P
HY220460.1 Clone H04D122J02 testis P
HY243616.1 Clone H04D196I01 testis P
CA311450.1 Clone UI-CF-FN0-afd-g-01-0-UI lung 3' read A
CA405536.1 adipose tissue 5' read P
CA406082.1 adipose tissue 5' read P
CA426581.1 Clone UI-H-FE1-beh-p-18-0-UI bone 3' read A
CA455514.1 Clone IMAGE:6739648 mixed 5' read A
AA328381.1 embryonic tissue 5' read
AA378100.1 connective tissue 5' read
T82179.1 Clone IMAGE:116031 mixed 5' read
AA448252.1 Clone IMAGE:782814 testis 3' read A
AA513312.1 Clone IMAGE:965295 mammary gland 3' read A
AA573476.1 Clone IMAGE:1071988 mammary gland 3' read A
AA608969.1 Clone IMAGE:1030752 testis 3' read P
AA669464.1 Clone IMAGE:884903 lung 3' read
AA702210.1 Clone IMAGE:384162 pineal gland 3' read A
AA830309.1 Clone IMAGE:1353079 lymph node 3' read A
AA888785.1 Clone IMAGE:1405907 parathyroid 3' read A
AA913330.1 Clone IMAGE:1524741 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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