> Katanin p60 (ATPase containing) subunit A 1 (KATNA1)
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UGID:619138     UniGene Hs.450175     Homo sapiens (human)   KATNA1 Order cDNA clone, Links
Katanin p60 (ATPase containing) subunit A 1 (KATNA1)

Human protein-coding gene KATNA1. Represented by 106 ESTs from 57 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 619138 - Hs.450175]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001173304.1 PREDICTED: katanin p60 ATPase-containing subunit A1 isoform 7 P. troglodytes 100.0 490
NP_008975.1 KATNA1 gene product H. sapiens 100.0 490
XP_001086813.1 PREDICTED: katanin p60 ATPase-containing subunit A1-like M. mulatta 99.7 383
NP_035965.2 Katna1 gene product M. musculus 96.3 492
NP_001084226.1 katanin p60 ATPase-containing subunit X. laevis 91.2 487
NP_001018440.1 katna1 gene product D. rerio 88.5 484
NP_524997.2 katanin 60, isoform A D. melanogaster 70.3 542
NP_178151.1 Katanin p60 ATPase-containing subunit A. thaliana 65.5 516
XP_001698289.1 katanin p60 catalytic subunit C. reinhardtii 60.4 293
NP_492257.1 Protein MEI-1, isoform a C. elegans 57.6 361
XP_958048.1 vacuolar protein sorting-associated protein VPS4 N. crassa 57.5 320
NP_015499.1 AAA family ATPase VPS4 S. cerevisiae 57.2 311
Other hits (2 of 63) [Show all]SpeciesId(%)Len(aa)
XP_003898110.1 PREDICTED: katanin p60 ATPase-containing subunit A1 P. anubis 99.4 490
XP_001502110.1 PREDICTED: katanin p60 ATPase-containing subunit A1 isoform 1 E. caballus 99.0 490

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: testis; kidney; bone marrow; connective tissue; mixed; pharynx; uncharacterized tissue; brain; lung; placenta; liver; lymph node; skin; stomach; eye; mammary gland; thyroid; bone; mouth; uterus; embryonic tissue; adipose tissue; pancreas; ascites
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q25.1
UniSTS entry: Chr 6 SHGC-32611 [Map Viewer]
UniSTS entry: Chr 6 KATNA1
UniSTS entry: Chr 6 RH46515
UniSTS entry: Chr 6 STS-T47614
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AF056022.1 Homo sapiens p60 katanin mRNA, complete cds P
BC050428.1 Homo sapiens katanin p60 (ATPase-containing) subunit A 1, mRNA (cDNA clone MGC:54153 IMAGE:5764501), complete cds PA
NM_007044.3 Homo sapiens katanin p60 (ATPase containing) subunit A 1 (KATNA1), transcript variant 1, mRNA PA
AK292090.1 Homo sapiens cDNA FLJ75303 complete cds, highly similar to Homo sapiens p60 katanin mRNA PA
NM_001204076.1 Homo sapiens katanin p60 (ATPase containing) subunit A 1 (KATNA1), transcript variant 2, mRNA PA

EST sequences (106)

AA993731.1 Clone IMAGE:1620008 testis 3' read
AA903772.1 Clone IMAGE:1518909 uncharacterized tissue 3' read PA
AI025692.1 Clone IMAGE:1644342 testis 3' read PA
AI040741.1 Clone IMAGE:1656346 mixed 3' read
BX102424.1 Clone IMAGp998E09519_;_IMAGE:241520 mixed P
AI191768.1 Clone IMAGE:1734090 testis 3' read P
AI220473.1 Clone IMAGE:1837956 testis 3' read PA
AI268183.1 Clone IMAGE:1880497 mixed 3' read A
CB112907.1 Clone L6ChoCK0-9-H11 liver 5' read P
AI246235.1 Clone IMAGE:1857931 mixed 3' read A
AI350542.1 Clone IMAGE:1947962 uncharacterized tissue 3' read PA
AI352071.1 Clone IMAGE:1933479 mixed 3' read A
AI521477.1 Clone IMAGE:2182978 stomach 3' read PA
AI590918.1 Clone IMAGE:2266834 mouth 3' read A
CB243927.1 Clone UI-CF-FN0-agg-m-14-0-UI lung 3' read PA
AL042426.1 Clone DKFZp434C2321 testis 5' read P
BX385782.2 Clone CS0DI002YB10 placenta 3' read P
AI873735.1 Clone IMAGE:2437355 uterus 3' read A
BX406191.2 Clone CS0DM010YB10 liver 3' read P
BX427503.2 Clone CS0DM010YB10 liver 5' read P
BX390395.2 Clone CS0DI032YP20 placenta 5' read P
CD689568.1 pharynx P
CF138614.1 Clone IMAGE:3094464 lymph node 5' read
CF264674.1 Clone IMAGE:30512518 brain 5' read P
AW263741.1 Clone IMAGE:2753820 lung 3' read A
H00231.1 Clone IMAGE:149526 placenta 5' read P
CN428969.1 embryonic tissue 5' read P
CN428970.1 embryonic tissue 5' read P
AW975635.1 uncharacterized tissue PA
BE048391.1 Clone IMAGE:3131553 kidney 3' read
BE886730.1 Clone IMAGE:3909693 uterus 5' read P
BF241888.1 Clone IMAGE:4108937 bone marrow 5' read P
BF436125.1 Clone IMAGE:3273709 mixed 3' read PA
DB031858.1 Clone TESTI2016058 testis 5' read P
DB302132.1 Clone BRAMY2020804 brain 3' read PA
DB335990.1 Clone TESTI2002517 testis 3' read PA
H90494.1 Clone IMAGE:241520 mixed 3' read
H90586.1 Clone IMAGE:241520 mixed 5' read P
DB532253.1 Clone H023017D24 brain 3' read A
DB520742.1 Clone H013068N09 testis 3' read PA
DB521340.1 Clone H013071D06 testis 3' read PA
DB521833.1 Clone H013073G11 testis 3' read A
DB521835.1 Clone H013073G13 testis 3' read PA
DB521857.1 Clone H013073I01 testis 3' read PA
DB506941.1 Clone H013002D24 testis 3' read A
DB563590.1 Clone H033047G19 brain 3' read PA
DB526000.1 Clone H013090K11 testis 3' read A
AL525829.3 Clone CS0DC013YJ02 uncharacterized tissue 3' read P
AL525872.3 Clone CS0DC013YJ02 uncharacterized tissue 5' read P
DB456423.1 Clone H013073G11 testis 5' read
DB515407.1 Clone H013045N17 testis 3' read PA
AL543501.3 Clone CS0DI003YE04 placenta 3' read P
AL543528.3 Clone CS0DI003YE04 placenta 5' read P
BG413552.1 Clone IMAGE:3391091 mixed 3' read P
BG184275.1 connective tissue
BG186164.1 connective tissue P
BG186910.1 connective tissue P
BG190973.1 connective tissue P
BG195737.1 connective tissue P
BG196247.1 connective tissue P
BG202921.1 connective tissue
BG211251.1 connective tissue P
BG211780.1 connective tissue
BG212836.1 connective tissue P
BG213364.1 connective tissue P
BG215523.1 connective tissue P
BG220153.1 connective tissue P
BG740296.1 Clone IMAGE:4780544 skin 5' read
BG740360.1 Clone IMAGE:4779197 skin 5' read P
BG742430.1 Clone IMAGE:4780499 skin 5' read
EL734597.1 mixed 5' read P
T47430.1 Clone IMAGE:71100 placenta 3' read
T47614.1 Clone IMAGE:71287 placenta 3' read
BI490768.1 Clone IMAGE:5173086 mixed 3' read
BI755443.1 Clone IMAGE:5195251 brain 5' read P
BI831339.1 Clone IMAGE:5166364 brain 5' read P
BI871578.1 Clone IMAGE:5405991 liver 5' read P
BM684987.1 Clone UI-E-EJ1-ajl-k-21-0-UI eye 3' read A
BM782172.1 Clone S17N258215-1-C05 stomach 5' read P
BM791543.1 Clone S22SNU16n1-9-E05 ascites 5' read P
BM972072.1 Clone UI-CF-EC1-abp-a-21-0-UI lung 3' read PA
BQ312099.1 mammary gland P
BQ350608.1 thyroid P
BG119162.1 Clone IMAGE:4441778 liver 5' read P
BM931942.1 Clone UI-E-EJ1-ajl-k-21-0-UI eye 5' read A
BU624610.1 Clone UI-H-FG1-bgk-b-08-0-UI bone 3' read A
CA406415.1 adipose tissue 5' read P
CA418489.1 Clone UI-H-EZ1-bbd-e-08-0-UI bone 3' read PA
CA426364.1 Clone UI-H-FE1-beh-c-01-0-UI bone 3' read PA
CA427490.1 Clone UI-H-FH1-bfi-n-13-0-UI bone 3' read PA
AA283968.1 Clone IMAGE:700736 lymph node 5' read
CA487451.1 Clone IMAGE:6718949 mixed 5' read PA
AA344883.1 liver 5' read P
CA950724.1 Clone IMAGE:6609868 pancreas 3' read
CA950970.1 Clone IMAGE:6609868 pancreas 5' read P
AA403059.1 Clone IMAGE:726870 testis 5' read P
AA609582.1 Clone IMAGE:1031734 testis 3' read A
AA609740.1 Clone IMAGE:1031922 testis 3' read A
AA701274.1 Clone IMAGE:435630 mixed 3' read PA
AA708715.1 Clone IMAGE:506050 uterus 3' read PA
AA730428.1 Clone IMAGE:1249288 bone
AA769264.1 Clone IMAGE:1289502 lymph node 3' read PA
AA912567.1 Clone IMAGE:1550811 uncharacterized tissue 3' read A
AA913183.1 Clone IMAGE:1554864 kidney 3' read A
AA913645.1 Clone IMAGE:1554864 kidney 3' read PA
AA865458.1 Clone IMAGE:1470037 uncharacterized tissue 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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