> Coiled-coil domain containing 78 (CCDC78)
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UGID:204405     UniGene Hs.381943     Homo sapiens (human)   CCDC78 Order cDNA clone, Links
Coiled-coil domain containing 78 (CCDC78)

Human protein-coding gene CCDC78. Represented by 47 ESTs from 27 cDNA libraries. Corresponds to reference sequence NM_001031737.2. [UniGene 204405 - Hs.381943]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001026907.2 CCDC78 gene product H. sapiens 100.0 437
NP_001159401.1 Ccdc78 gene product M. musculus 59.7 417
Other hits (2 of 9) [Show all]SpeciesId(%)Len(aa)
XP_003952799.1 PREDICTED: LOW QUALITY PROTEIN: coiled-coil domain-containing protein 78 P. troglodytes 98.3 351
XP_003916346.1 PREDICTED: coiled-coil domain-containing protein 78 P. anubis 91.3 437

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; thymus; trachea; brain; stomach; prostate; mixed; uterus; uncharacterized tissue; liver; eye; kidney; connective tissue; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16p13.3
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_001031737.2 Homo sapiens coiled-coil domain containing 78 (CCDC78), mRNA P
AK298111.1 Homo sapiens cDNA FLJ60745 complete cds P
AK303991.1 Homo sapiens cDNA FLJ57861 complete cds P
BC042110.1 Homo sapiens coiled-coil domain containing 78, mRNA (cDNA clone MGC:50726 IMAGE:5177109), complete cds PA

EST sequences (47)

AA946633.1 Clone IMAGE:1588651 kidney 3' read
BX110503.1 Clone IMAGp998D225635_;_IMAGE:2275557 uterus PA
CB110352.1 Clone L5HLK1-7-F11 liver 5' read
AI683049.1 Clone IMAGE:2262976 uterus 3' read PA
AI683704.1 Clone IMAGE:2275557 uterus 3' read P
AI811221.1 Clone IMAGE:2265256 uterus 3' read PA
BX332771.2 Clone CS0DC015YD16 uncharacterized tissue 3' read P
BX354163.2 Clone CS0DC015YD16 uncharacterized tissue 5' read P
BX418283.2 Clone CS0DF001YH06 brain 3' read P
CB854770.1 Clone UI-CF-EN0-acn-c-02-0-UI lung 3' read A
AW264810.1 Clone IMAGE:2752658 lung 3' read PA
BE261598.1 Clone IMAGE:3501802 brain 5' read
DA586014.1 Clone HLUNG2006482 lung 5' read P
DA586083.1 Clone HLUNG2006570 lung 5' read P
DA594709.1 Clone HLUNG2017731 lung 5' read P
DA408479.1 Clone BRTHA3014507 brain 5' read P
DA962523.1 Clone STOMA2000188 stomach 5' read P
DB121213.1 Clone THYMU2029710 thymus 5' read P
DB227917.1 Clone TRACH3020563 trachea 5' read P
DB312482.1 Clone BRTHA3014507 brain 3' read
DB349467.1 Clone TRACH3013072 trachea 3' read
DB349821.1 Clone TRACH3020563 trachea 3' read P
DB205446.1 Clone TRACH2017396 trachea 5' read P
DB212143.1 Clone TRACH2025778 trachea 5' read P
DB319410.1 Clone HLUNG2006570 lung 3' read
DB222188.1 Clone TRACH3013072 trachea 5' read
DB334449.1 Clone STOMA2000188 stomach 3' read P
EC449089.1 prostate
EC566969.1 prostate
D31021.1 lung 5' read
BG913604.1 Clone IMAGE:4943332 brain 5' read
DC341680.1 Clone BRTHA2032441 brain 5' read P
DC415168.1 Clone TRACH2024176 trachea 5' read P
BI769503.1 Clone IMAGE:5208348 mixed 5' read P
BI769726.1 Clone IMAGE:5204310 mixed 5' read
BI772239.1 Clone IMAGE:5205072 mixed 5' read P
BI820560.1 Clone IMAGE:5177109 mixed 5' read P
BI823482.1 Clone IMAGE:5181942 mixed 5' read P
BI919228.1 Clone IMAGE:5241976 brain 5' read P
BM670493.1 Clone UI-E-DW1-aha-l-22-0-UI eye 3' read PA
BM700306.1 Clone UI-E-DW1-aha-l-22-0-UI eye 5' read P
BM753602.1 Clone S7SNU719-22-H03 stomach 5' read P
BM783343.1 Clone S7SNU719-35-A08 stomach 5' read P
BM976018.1 Clone UI-CF-EN1-acx-g-05-0-UI lung 3' read PA
BM980778.1 Clone UI-CF-EN1-ade-g-15-0-UI lung 3' read PA
BM996117.1 Clone IMAGE:5889953 connective tissue 3' read A
BM150922.1 Clone TCBAP1288 lymph node A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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