> Collagen, type XX, alpha 1 (COL20A1)
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UGID:173190     UniGene Hs.271285     Homo sapiens (human)   COL20A1 Order cDNA clone, Links
Collagen, type XX, alpha 1 (COL20A1)

Human protein-coding gene COL20A1. Represented by 46 ESTs from 13 cDNA libraries. EST representation biased toward brain; glioma. Corresponds to reference sequence NM_020882.2. [UniGene 173190 - Hs.271285]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_065933.2 COL20A1 gene product H. sapiens 100.0 1283
NP_082794.1 Col20a1 gene product M. musculus 77.8 1305
NP_001083544.1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) precursor X. laevis 46.1 180
XP_003200547.1 PREDICTED: collagen alpha-1(XIV) chain-like D. rerio 45.2 259
Other hits (2 of 22) [Show all]SpeciesId(%)Len(aa)
XP_001148451.1 PREDICTED: collagen alpha-1(XX) chain P. troglodytes 98.2 1283
XP_003904559.1 PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XX) chain P. anubis 91.7 1352

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: brain [show more like this]
glioma [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; testis; eye; uncharacterized tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q13.33
UniSTS entry: Chr 20 SHGC-32461
UniSTS entry: Chr 20 RH67296
UniSTS entry: Chr 20 G32605
UniSTS entry: Chr 1 D1S3693
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

BC043183.1 Homo sapiens collagen, type XX, alpha 1, mRNA (cDNA clone MGC:44186 IMAGE:5287981), complete cds PA
NM_020882.2 Homo sapiens collagen, type XX, alpha 1 (COL20A1), mRNA PA
AB040943.1 Homo sapiens mRNA for KIAA1510 protein, partial cds P
AL390141.1 Homo sapiens mRNA; cDNA DKFZp547J124 (from clone DKFZp547J124) PA
BC013658.1 Homo sapiens collagen, type XX, alpha 1, mRNA (cDNA clone IMAGE:4153348), partial cds PA
BC019637.1 Homo sapiens collagen, type XX, alpha 1, mRNA (cDNA clone IMAGE:4933482), complete cds PA
AK098702.1 Homo sapiens cDNA FLJ25836 fis, clone TST08317 P
BC041767.1 Homo sapiens collagen, type XX, alpha 1, mRNA (cDNA clone IMAGE:4181576) PA

EST sequences (46)

AA909958.1 Clone IMAGE:1523114 mixed 3' read P
BX109265.1 Clone IMAGp998N03159_;_IMAGE:34933 brain PA
AI272270.1 Clone IMAGE:1956171 brain 3' read P
R45159.1 Clone IMAGE:34933 brain 3' read
Z45774.1 Clone c-ztg11 brain
F04648.1 Clone c-ztg11 brain 3' read
AW592591.1 Clone IMAGE:2934773 mixed 3' read
CV029324.1 mixed 5' read P
CR748448.1 Clone IMAGp998I11287_;_IMAGE:52191 uncharacterized tissue 3' read A
H25171.1 Clone IMAGE:52191 brain 5' read
BF339443.1 Clone IMAGE:4186486 brain 5' read
BF341552.1 Clone IMAGE:4149086 brain 5' read
BF343607.1 Clone IMAGE:4150354 brain 5' read P
BF344604.1 Clone IMAGE:4150926 brain 5' read
BF345918.1 Clone IMAGE:4153348 brain 5' read P
BF345985.1 Clone IMAGE:4154112 brain 5' read P
BF346541.1 Clone IMAGE:4155877 brain 5' read
BF346846.1 Clone IMAGE:4157220 brain 5' read P
BF347240.1 Clone IMAGE:4156578 brain 5' read P
BF347882.1 Clone IMAGE:4158441 brain 5' read A
BF527402.1 Clone IMAGE:4177276 brain 5' read P
BF527501.1 Clone IMAGE:4177530 brain 5' read P
BF528277.1 Clone IMAGE:4180527 brain 5' read
BF528839.1 Clone IMAGE:4179091 brain 5' read A
BF529693.1 Clone IMAGE:4181576 brain 5' read P
BF530275.1 Clone IMAGE:4214436 brain 5' read P
BF531027.1 Clone IMAGE:4215211 brain 5' read P
DB078179.1 Clone TESTI4022957 testis 5' read
BG818373.1 Clone IMAGE:4915752 brain 5' read
BG818387.1 Clone IMAGE:4915614 brain 5' read P
BG819225.1 Clone IMAGE:4932019 brain 5' read
BG820122.1 Clone IMAGE:4933232 brain 5' read P
BG820155.1 Clone IMAGE:4933482 brain 5' read P
BG820677.1 Clone IMAGE:4933655 brain 5' read
BG910308.1 Clone IMAGE:4938022 brain 5' read P
BG910623.1 Clone IMAGE:4944502 brain 5' read
BG912593.1 Clone IMAGE:4940285 brain 5' read P
BG912938.1 Clone IMAGE:4939641 brain 5' read P
BG913981.1 Clone IMAGE:4942482 brain 5' read A
BI041496.1 brain
EL737179.1 mixed 5' read P
BG708172.1 Clone IMAGE:4794395 brain 5' read P
BI601787.1 Clone IMAGE:5287981 brain 5' read
BM548112.1 Clone IMAGE:5732955 brain 5' read P
BM704820.1 Clone UI-E-CI1-afp-b-11-0-UI eye 5' read P
BU730454.1 Clone UI-E-CI1-afp-b-11-0-UI eye 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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