> Small nucleolar RNA host gene 11 (non-protein coding) (SNHG11)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:133643     UniGene Hs.16936     Homo sapiens (human)   SNHG11 Links
Small nucleolar RNA host gene 11 (non-protein coding) (SNHG11)

Human miscRNA gene SNHG11. Represented by 199 ESTs from 117 cDNA libraries. Corresponds to reference sequence NR_003239.1. [UniGene 133643 - Hs.16936]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003953782.1 PREDICTED: putative uncharacterized protein SNHG11-like P. troglodytes 99.1 107
NP_116178.2 PARP10 gene product H. sapiens 97.9 94
Other hits (SpeciesId(%)Len(aa)
XP_003904803.1 PREDICTED: uncharacterized protein LOC101018119 P. anubis 93.1 115
XP_002798189.1 PREDICTED: hypothetical protein LOC100426413 M. mulatta 86.9 144

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; pancreas; uncharacterized tissue; uterus; mammary gland; kidney; intestine; embryonic tissue; placenta; testis; spleen; prostate; thyroid; nerve; mouth; esophagus; muscle; connective tissue; thymus; pharynx; eye; lung; skin; spinal cord; ovary; liver; trachea; tonsil; blood; stomach; ascites; bone; umbilical cord
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20q11.23
UniSTS entry: Chr 20 WI-14331 [Map Viewer]
UniSTS entry: Chr 20 AL034527
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

AF454939.1 Homo sapiens hypothetical protein mRNA, complete cds PA
AK055434.1 Homo sapiens cDNA FLJ30872 fis, clone FEBRA2004293 P
AK290212.1 Homo sapiens cDNA FLJ76380 complete cds P
AF497716.1 Homo sapiens tissue-type brain hypothetical protein mRNA, complete cds PA
AK091209.1 Homo sapiens cDNA FLJ33890 fis, clone CTONG2007474
NR_003239.1 Homo sapiens small nucleolar RNA host gene 11 (non-protein coding) (SNHG11), non-coding RNA PA
BC040237.1 Homo sapiens small nucleolar RNA host gene 11 (non-protein coding), mRNA (cDNA clone IMAGE:4818983) PA

EST sequences (199)

R14470.1 Clone IMAGE:28850 brain 5' read
AI003778.1 Clone IMAGE:1635213 kidney 3' read A
AI042210.1 Clone IMAGE:1660751 mixed 3' read A
AI125783.1 Clone IMAGE:1737247 testis 3' read A
AI084790.1 Clone IMAGE:1681640 skin 3' read A
AI167416.1 Clone IMAGE:1661617 mixed 3' read A
BX118210.1 Clone IMAGp998M22362_;_IMAGE:191805 mixed
AI264603.1 Clone IMAGE:1869397 kidney 3' read A
AI275468.1 Clone IMAGE:1878034 mixed 3' read A
CB142876.1 Clone L11SNU354s1-20-B05 liver 5' read P
CB147515.1 Clone L11SNU354s1-9-G07 liver 5' read P
CB144655.1 Clone L11SNU354s1-28-C05 liver 5' read
AI276171.1 Clone IMAGE:1878177 mixed 3' read A
R39891.1 Clone IMAGE:26736 brain 3' read A
AI381617.1 Clone IMAGE:2089228 mixed 3' read A
R48422.1 Clone IMAGE:153533 mammary gland 5' read
AI457598.1 Clone IMAGE:2146173 mixed 3' read A
R40988.1 Clone IMAGE:28876 brain 3' read A
AI673100.1 Clone IMAGE:2345511 thymus 3' read A
AI760566.1 Clone IMAGE:2387845 uncharacterized tissue 3' read A
AI808326.1 Clone IMAGE:2359424 mixed 3' read A
CB305394.1 Clone UI-CF-EN1-aed-m-03-0-UI lung 3' read A
AI818222.1 Clone IMAGE:2421408 pancreas 3' read A
AI924555.1 Clone IMAGE:2449978 lung 3' read A
CB961336.1 Clone IMAGE:30337840 placenta 5' read P
BX327006.2 Clone CS0DC003YO21 uncharacterized tissue 5' read A
BX393786.2 Clone CS0DC003YO21 uncharacterized tissue 5' read
AI873071.1 Clone IMAGE:2347329 mixed 3' read A
AI874100.1 Clone IMAGE:2439240 uterus 3' read A
CD388826.1 embryonic tissue 5' read
BX497605.1 Clone DKFZp779L1334 liver 5' read
AW044195.1 Clone IMAGE:2553994 mixed 3' read A
AW189888.1 Clone IMAGE:2678819 pancreas 3' read A
CF455261.1 Clone IMAGE:30516938 nerve 5' read
AW244125.1 Clone IMAGE:2570318 connective tissue 3' read A
AW273161.1 Clone IMAGE:2762046 uterus 3' read A
AW375363.1 intestine
CK001084.1 Clone IMAGE:30718845 spinal cord 5' read
AW411324.1 Clone IMAGE:2964634 muscle 3' read A
AW510700.1 Clone IMAGE:2907230 mixed 3' read A
AW515615.1 Clone IMAGE:2915537 lung 3' read A
AW628424.1 Clone IMAGE:2970474 mixed 3' read A
AW661805.1 Clone IMAGE:2977205 mixed 3' read A
CK818198.1 Clone IMAGE: pancreas 5' read A
CK818197.1 Clone IMAGE: pancreas 3' read P
CN265198.1 embryonic tissue 5' read P
AW968199.1 uncharacterized tissue
AW969491.1 uncharacterized tissue A
BE163592.1 thyroid
BE163737.1 thyroid
BE163819.1 thyroid
H22153.1 Clone IMAGE:160542 mammary gland 3' read
H22204.1 Clone IMAGE:160542 mammary gland 5' read
BP209431.1 Clone CBL03245 brain 5' read P
BE277383.1 Clone IMAGE:3546969 skin 5' read P
BE277445.1 Clone IMAGE:3546943 skin 5' read P
BP213136.1 Clone CBR05979 brain 5' read P
BP300265.1 Clone MPE00716 uncharacterized tissue 5' read P
BP352105.1 Clone T3R06860 esophagus 5' read P
BP355182.1 Clone T7R05974 esophagus 5' read P
BP361645.1 Clone THR06162 brain 5' read P
BP364289.1 Clone TIR03787 lung 5' read P
BP371750.1 Clone TST09676 testis 5' read P
BP373090.1 Clone UBA05235 umbilical cord 5' read
BP276262.1 Clone KDN05896 kidney 5' read P
BP379267.1 Clone WMD05170 uterus 5' read
BP383320.1 Clone kaia4148 intestine 5' read
H26725.1 Clone IMAGE:158248 mammary gland 5' read
BE390019.1 Clone IMAGE:3607294 uterus 5' read
BE391781.1 Clone IMAGE:3606077 uterus 5' read
BE394837.1 Clone IMAGE:3658963 uterus 5' read
BE395751.1 Clone IMAGE:3632657 uterus 5' read P
BE646607.1 Clone IMAGE:3292496 uncharacterized tissue 3' read A
CX871431.1 Clone IMAGE:7486023 embryonic tissue 5' read P
BE730060.1 Clone IMAGE:3833246 skin 5' read P
BE745403.1 Clone IMAGE:3927035 ovary 5' read
BE745558.1 Clone IMAGE:3927034 ovary 5' read P
BE747933.1 Clone IMAGE:3929257 ovary 5' read P
H40444.1 Clone IMAGE:191805 mixed 5' read
H40445.1 Clone IMAGE:191805 mixed 3' read
BE799009.1 Clone IMAGE:3937623 lung 5' read
R87094.1 Clone IMAGE:197439 mixed 5' read
BE883052.1 Clone IMAGE:3911583 uterus 5' read P
DN993933.1 Clone TC101764 brain 5' read
DR002640.1 Clone TC120621 brain 5' read A
BE856785.1 Clone IMAGE:3299868 mixed 3' read A
BF306582.1 Clone IMAGE:4122677 muscle 5' read P
BF351189.1 thyroid
BF663360.1 Clone IMAGE:4297779 tonsil 5' read P
DA056500.1 Clone BRACE2002790 brain 5' read P
DA101951.1 Clone BRACE3014342 brain 5' read P
DA184277.1 Clone BRAMY3002650 brain 5' read P
DA120314.1 Clone BRACE3041009 brain 5' read
DA266947.1 Clone BRCAN2020500 brain 5' read P
DA360230.1 Clone BRSTN2006275 brain 5' read P
DA505470.1 Clone FCBBF3020988 brain 5' read P
AW299397.1 Clone IMAGE:2772015 kidney 3' read A
DA516014.1 Clone FEBRA2004293 brain 5' read P
DA411252.1 Clone BRTHA3018343 brain 5' read P
DA366789.1 Clone BRSTN2014800 brain 5' read
DA439351.1 Clone CTONG2007474 mouth 5' read
DA530615.1 Clone FEBRA2023645 brain 5' read P
DA350955.1 Clone BRSSN2013785 brain 5' read P
DA540741.1 Clone FELNG2000680 lung 5' read P
DB040428.1 Clone TESTI2027239 testis 5' read P
DA947974.1 Clone SPLEN2024210 spleen 5' read P
DA878150.1 Clone PROST2016832 prostate 5' read P
DA957399.1 Clone SPLEN2036706 spleen 5' read P
BF435380.1 Clone IMAGE:3268456 mixed 3' read A
DB014360.1 Clone TESOP2003131 esophagus 5' read
BF525766.1 Clone IMAGE:4213081 brain 5' read P
DB023152.1 Clone TESTI2004294 testis 5' read P
DA866393.1 Clone PROST2001050 prostate 5' read P
DA788915.1 Clone OCBBF2026961 brain 5' read P
DA867045.1 Clone PROST2001908 prostate 5' read P
DB026116.1 Clone TESTI2008200 testis 5' read P
DA789301.1 Clone OCBBF2027543 brain 5' read P
DA874285.1 Clone PROST2011772 prostate 5' read P
DB230672.1 Clone TRACH3024086 trachea 5' read P
DB149388.1 Clone THYMU3025673 thymus 5' read P
DB149615.1 Clone THYMU3025979 thymus 5' read
DB313589.1 Clone CTONG2007474 mouth 3' read A
DB085239.1 Clone TESTI4032447 testis 5' read P
DB236859.1 Clone TRACH3032283 trachea 5' read P
DB316832.1 Clone FEBRA2004293 brain 3' read A
DB140561.1 Clone THYMU3013602 thymus 5' read P
DB279068.1 Clone UTERU3005286 uterus 5' read
DB261647.1 Clone UTERU2019439 uterus 5' read P
DB480789.1 Clone H023087J15 brain 5' read P
DB549579.1 Clone H023087J15 brain 3' read A
DB472203.1 Clone H023054L13 brain 5' read P
DB540957.1 Clone H023054L13 brain 3' read
BG272303.1 Clone IMAGE:4257367 pharynx A
BG323917.1 Clone IMAGE:4560970 kidney 5' read
BG335640.1 Clone IMAGE:4541896 placenta 5' read P
DT219603.1 brain P
BG209446.1 connective tissue A
BG753439.1 Clone IMAGE:4875333 eye 5' read P
BG703635.1 Clone IMAGE:4818983 brain 5' read P
BI114578.1 Clone IMAGE:5021356 muscle 5' read P
BI325028.1 pancreas 3' read A
BI438282.1 pancreas 5' read P
BI768028.1 Clone IMAGE:5205966 mixed 5' read P
BI833264.1 Clone IMAGE:5226274 mixed 5' read
BI851004.1 Clone IMAGE:4572771 mixed 3' read A
BI916482.1 Clone IMAGE:5246779 brain 5' read
BI908252.1 Clone IMAGE:5215987 blood 5' read P
BM008882.1 Clone IMAGE:5422839 pancreas 5' read
CU449128.1 skin
BM545098.1 Clone IMAGE:5588902 ovary 5' read P
BM680546.1 Clone UI-E-EJ0-aim-n-06-0-UI eye 3' read A
BM717353.1 Clone UI-E-EJ0-ahm-o-07-0-UI eye 5' read
BM717910.1 Clone UI-E-EJ0-aim-g-10-0-UI eye 5' read
BM718096.1 Clone UI-E-EJ0-aim-n-06-0-UI eye 5' read A
BM727499.1 Clone UI-E-EJ0-ail-l-08-0-UI eye 5' read
BM753620.1 Clone S7SNU719-30-B05 stomach 5' read
BM833669.1 Clone S11SNU1-48-A07 ascites 5' read P
BM855086.1 Clone S22SNU16n1-150-A03 ascites 5' read
BM920600.1 Clone IMAGE:5750630 mixed 5' read P
BM981389.1 Clone UI-CF-EN1-adh-f-07-0-UI lung 3' read A
BQ001587.1 Clone IMAGE:5893427 connective tissue 3' read A
BQ015953.1 Clone IMAGE:5886432 connective tissue 3' read A
AL732069.1 uncharacterized tissue
AL732070.1 uncharacterized tissue P
AL732071.1 uncharacterized tissue P
BQ574498.1 Clone UI-H-EZ1-bba-a-06-0-UI bone 3' read A
BQ685452.1 Clone IMAGE:6207008 pancreas 5' read P
BQ777178.1 Clone IMAGE:6032751 pancreas 5' read P
BQ778294.1 Clone IMAGE:6032751 pancreas 3' read A
BQ888199.1 Clone IMAGE:6192771 nerve 5' read P
BU071793.1 Clone IMAGE:6037103 pancreas 5' read P
BU073306.1 Clone IMAGE:6037103 pancreas 3' read A
BU620235.1 Clone UI-H-FH1-bfr-f-13-0-UI bone 3' read A
BU739161.1 Clone UI-E-EJ0-ahm-o-07-0-UI eye 3' read A
BU740743.1 Clone UI-E-EJ0-ail-l-08-0-UI eye 3' read A
BU742126.1 Clone UI-E-EJ0-aim-g-10-0-UI eye 3' read A
BU789105.1 Clone IMAGE:6128898 pancreas 3' read A
BU789374.1 Clone IMAGE:6128898 pancreas 5' read
HY045817.1 Clone H04D160F21 testis P
HY232153.1 Clone H04D160F21 testis
CA308656.1 Clone UI-H-FT1-bia-k-22-0-UI lung 3' read A
CA454357.1 Clone IMAGE:6719553 mixed 5' read P
AA464847.1 Clone IMAGE:789372 embryonic tissue 3' read A
AA468204.1 Clone IMAGE:783245 prostate
AA468277.1 Clone IMAGE:783243 prostate
AA468450.1 Clone IMAGE:783436 prostate
AA491735.1 Clone IMAGE:912122 kidney
AA470331.1 Clone IMAGE:783436 prostate
AA470347.1 Clone IMAGE:783460 prostate
T91840.1 Clone IMAGE:116573 mixed 3' read
T91926.1 Clone IMAGE:116573 mixed 5' read
AA570053.1 Clone IMAGE:900399 intestine 3' read A
AA577244.1 Clone IMAGE:1074809 intestine 3' read A
T25024.1 Clone 21F12 intestine
AA635778.1 Clone IMAGE:1169629 prostate 3' read A
AA777670.1 Clone IMAGE:448885 mixed 3' read A
AA827440.1 Clone IMAGE:1422839 kidney 3' read A
AA877600.1 Clone IMAGE:1161167 intestine 3' read A
R13596.1 Clone IMAGE:26736 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help