> ATP-binding cassette, sub-family A (ABC1), member 9 (ABCA9)
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UGID:149316     UniGene Hs.131686     Homo sapiens (human)   ABCA9 Links
ATP-binding cassette, sub-family A (ABC1), member 9 (ABCA9)

Human protein-coding gene ABCA9. Represented by 68 ESTs from 41 cDNA libraries. EST representation biased toward fetus. Corresponds to reference sequence NM_080283.3. [UniGene 149316 - Hs.131686]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_525022.2 ABCA9 gene product H. sapiens 100.0 1623
NP_671753.2 ATP-binding cassette sub-family A member 9 M. musculus 81.9 1622
NP_001092716.1 abca5 gene product D. rerio 56.1 1290
Other hits (2 of 37) [Show all]SpeciesId(%)Len(aa)
XP_001146190.2 PREDICTED: ATP-binding cassette sub-family A member 9 P. troglodytes 99.5 1623
XP_003913394.1 PREDICTED: ATP-binding cassette sub-family A member 9 P. anubis 97.0 1623

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: fetus [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; kidney; liver; mixed; brain; uterus; muscle; lung; mammary gland; embryonic tissue; intestine; testis; vascular; trachea; ovary; connective tissue; heart; stomach; pancreas; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q24.2
UniSTS entry: Chr 17 RH48279
UniSTS entry: Chr 17 RH102906
UniSTS entry: Chr 17 RH46167
UniSTS entry: Chr 17 SHGC-63484
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AK122687.1 Homo sapiens cDNA FLJ16148 fis, clone BRAMY2042195, highly similar to Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 8 (ABCA8) P
BC062472.1 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 9, mRNA (cDNA clone IMAGE:30407790), complete cds PA
CR627382.1 Homo sapiens mRNA; cDNA DKFZp686F2450 (from clone DKFZp686F2450) PA
AY028899.1 Homo sapiens ATP-binding cassette A9 mRNA, complete cds P
NM_080283.3 Homo sapiens ATP-binding cassette, sub-family A (ABC1), member 9 (ABCA9), mRNA PA
AL833712.1 Homo sapiens mRNA; cDNA DKFZp667N069 (from clone DKFZp667N069) PA
AK074491.1 Homo sapiens cDNA FLJ90010 fis, clone HEMBA1000349, weakly similar to ATP-BINDING CASSETTE TRANSPORTER 1 P
AK057068.1 Homo sapiens cDNA FLJ32506 fis, clone SMINT1000042, weakly similar to ATP-BINDING CASSETTE, SUB-FAMILY A, MEMBER 3 P
AF423307.1 Homo sapiens ATP-binding cassette sub-family A member 9 (ABCA9) mRNA, complete cds P

EST sequences (68)

BX099761.1 Clone IMAGp998N155283_;_IMAGE:2140622 stomach A
BX107680.1 Clone IMAGp998F15671_;_IMAGE:299918 lung
AI284184.1 Clone IMAGE:1857635 mixed 3' read P
AI372047.1 Clone IMAGE:2046124 uncharacterized tissue 3' read P
AI446543.1 Clone IMAGE:2140622 stomach 3' read A
CB265638.1 adipose tissue 5' read
BX280456.1 Clone IMAGp998F191200_;_IMAGE:503058 uterus P
BX281489.1 Clone IMAGp998M055037_;_IMAGE:2046124 uncharacterized tissue P
AI822115.1 Clone IMAGE:299918 lung 3' read A
F00423.1 Clone 19G06 muscle
AI640540.1 Clone IMAGE:2299506 kidney 3' read A
CD519658.1 Clone IMAGE:30407790 brain 5' read P
BX471003.1 Clone DKFZp686N11123 muscle 5' read P
BX496612.1 Clone DKFZp779J2028 liver 5' read
BX500952.1 Clone DKFZp779I185 liver 5' read P
BX502059.1 Clone DKFZp779K0166 liver 5' read
AW090271.1 Clone IMAGE:2591785 brain 3' read A
AI908932.1 mammary gland
AI908941.1 mammary gland
AW296945.1 Clone IMAGE:2731468 uncharacterized tissue 3' read PA
CD635767.1 uncharacterized tissue P
CD635768.1 uncharacterized tissue P
CD635769.1 uncharacterized tissue
CD635770.1 uncharacterized tissue P
BU101530.1 mixed P
BU101531.1 mixed P
AV691046.1 Clone GKCAOA12 liver 5' read
AV691487.1 Clone GKCCNA11 liver 5' read
AV692159.1 Clone GKCAOB12 liver 5' read
AV696572.1 Clone GKCAOF09 liver 5' read
DA245875.1 Clone BRAWH3044663 brain 5' read P
DA260229.1 Clone BRCAN2012160 brain 5' read P
DA178155.1 Clone BRAMY2042195 brain 5' read P
DA568162.1 Clone HEMBA1000349 embryonic tissue 5' read P
DA915702.1 Clone SMINT1000042 intestine 5' read P
DA887004.1 Clone PUAEN2007397 vascular 5' read P
DA790306.1 Clone OCBBF2028922 brain 5' read P
DA722619.1 Clone NT2RI3003456 testis 5' read P
BF513667.1 Clone IMAGE:3071053 uncharacterized tissue 3' read A
DB225356.1 Clone TRACH3017217 trachea 5' read P
DB281234.1 Clone UTERU3008137 uterus 5' read P
DB354640.1 Clone HEMBA1000349 embryonic tissue 3' read P
DB284298.1 Clone UTERU3012158 uterus 5' read P
DB245254.1 Clone TUTER2001204 uterus 5' read P
DB291948.1 Clone UTERU3022504 uterus 5' read P
DB331511.1 Clone SMINT1000042 intestine 3' read P
DB208201.1 Clone TRACH2020920 trachea 5' read P
DY655441.1 Clone MGC11part.3.1.L1.1.G11 mixed P
EG327804.1 Clone MGC11part.2.3.L1.1.H02. mixed P
T41066.1 Clone IMAGE:62092 ovary 3' read A
EL737045.1 mixed 5' read P
N80032.1 Clone IMAGE:299918 lung 3' read A
W06995.1 Clone IMAGE:299918 lung 5' read
AL698804.1 Clone DKFZp686K0810 muscle 5' read
W84726.1 Clone IMAGE:415742 mixed 3' read A
AL704140.1 Clone DKFZp686D1229 muscle 5' read
BM992857.1 Clone IMAGE:5865038 connective tissue 3' read PA
AA027211.1 Clone IMAGE:366910 heart 5' read
AA027212.1 Clone IMAGE:366910 heart 3' read
BU072174.1 Clone IMAGE:6038757 pancreas 5' read
BU076154.1 Clone IMAGE:6038757 pancreas 3' read A
AA085721.1 Clone IMAGE:561944 muscle 3' read A
AA088895.1 Clone IMAGE:562016 muscle 3' read A
AA148691.1 Clone IMAGE:503058 uterus 5' read P
AA148692.1 Clone IMAGE:503058 uterus 3' read P
AA248948.1 heart 5' read P
T95875.1 Clone IMAGE:120447 mixed 3' read
AA774455.1 Clone 1343921 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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