> Chromosome 6 open reading frame 170 (C6orf170)
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UGID:145938     UniGene Hs.121396     Homo sapiens (human)   C6orf170 Links
Chromosome 6 open reading frame 170 (C6orf170)

Human protein-coding gene C6orf170. Represented by 70 ESTs from 40 cDNA libraries. Corresponds to reference sequence NM_152730.4. [UniGene 145938 - Hs.121396]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_689943.4 C6orf170 gene product H. sapiens 100.0 1256
NP_001028557.2 D630037F22Rik gene product M. musculus 87.0 1295
NP_001093493.1 uncharacterized protein LOC566474 D. rerio 61.3 1297
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_001164077.1 PREDICTED: protein broad-minded isoform 2 P. troglodytes 99.1 1256
XP_003898296.1 PREDICTED: protein broad-minded P. anubis 96.8 816

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; larynx; mammary gland; ovary; trachea; lung; testis; uncharacterized tissue; embryonic tissue; liver; lymph node; placenta; intestine; adrenal gland; uterus; parathyroid; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q22.31
UniSTS entry: Chr 6 RH93248
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AK126259.1 Homo sapiens cDNA FLJ44271 fis, clone TLIVE2009541 P
AK125385.1 Homo sapiens cDNA FLJ43395 fis, clone OCBBF2008770 P
AK131446.1 Homo sapiens cDNA FLJ16586 fis, clone TESTI4000137 P
AK055461.1 Homo sapiens cDNA FLJ30899 fis, clone FEBRA2005726 P
AK091554.1 Homo sapiens cDNA FLJ34235 fis, clone FCBBF3026651 P
NM_152730.4 Homo sapiens chromosome 6 open reading frame 170 (C6orf170), mRNA P

EST sequences (70)

AI052103.1 Clone IMAGE:1667310 parathyroid 3' read A
BX112581.1 Clone IMAGp998C04213_;_IMAGE:143163 placenta A
BX089961.1 Clone IMAGp998A144780_;_IMAGE:1947157 uncharacterized tissue P
CB157842.1 Clone L18POOL1n1-4-H03 liver 5' read
CB156589.1 Clone B2N807043-18-G02 brain 5' read P
AI341848.1 Clone IMAGE:1947157 uncharacterized tissue 3' read PA
AI984072.1 Clone IMAGE:2562039 lung 3' read
AW502864.1 Clone IMAGE:3077869 lymph node 5' read P
R73756.1 Clone IMAGE:143163 placenta 5' read
CN282080.1 embryonic tissue 5' read P
CN286156.1 embryonic tissue 5' read
CN308546.1 embryonic tissue 5' read A
AW968769.1 uncharacterized tissue
BP230211.1 Clone FBR06145 brain 5' read P
CV383601.1 larynx
CV383640.1 larynx
DN996166.1 Clone TC102742 mammary gland 5' read P
DR003235.1 Clone TC121738 brain 5' read P
BF088348.1 larynx P
BF088352.1 larynx P
BF155603.1 larynx
BF356518.1 larynx P
BF356520.1 larynx P
DA214223.1 Clone BRAWH3004188 brain 5' read P
DA327690.1 Clone BRHIP3023750 brain 5' read P
DA217550.1 Clone BRAWH3008470 brain 5' read P
DA335287.1 Clone BRHIP3035144 brain 5' read P
DA335335.1 Clone BRHIP3035216 brain 5' read P
DA231902.1 Clone BRAWH3027266 brain 5' read P
DA187814.1 Clone BRAMY3008529 brain 5' read P
DA109825.1 Clone BRACE3026590 brain 5' read P
DA698163.1 Clone NT2RI1000314 5' read P
DA509975.1 Clone FCBBF3026651 brain 5' read P
DA523344.1 Clone FEBRA2014108 brain 5' read P
DA517073.1 Clone FEBRA2005726 brain 5' read P
DA680416.1 Clone NOVAR1000027 ovary 5' read
DA491281.1 Clone FCBBF3002706 brain 5' read P
DA413629.1 Clone BRTHA3021663 brain 5' read P
DA770903.1 Clone OCBBF2003775 brain 5' read P
DA774955.1 Clone OCBBF2008770 brain 5' read P
DA809889.1 Clone OCBBF3026264 brain 5' read P
BF509016.1 Clone IMAGE:3085925 uncharacterized tissue 3' read PA
BF514360.1 Clone IMAGE:3081921 uncharacterized tissue 3' read PA
DA802245.1 Clone OCBBF3006639 brain 5' read P
DB231315.1 Clone TRACH3024867 trachea 5' read P
DB231366.1 Clone TRACH3024938 trachea 5' read P
DB231645.1 Clone TRACH3025313 trachea 5' read P
DB189075.1 Clone TLIVE2009541 liver 5' read P
DB084115.1 Clone TESTI4030961 testis 5' read P
DB228700.1 Clone TRACH3021603 trachea 5' read P
DB228754.1 Clone TRACH3021674 trachea 5' read P
DB060556.1 Clone TESTI4000137 testis 5' read P
DB060750.1 Clone TESTI4000400 testis 5' read P
DB063906.1 Clone TESTI4004518 testis 5' read P
DB325936.1 Clone OCBBF2008770 brain 3' read
DB070987.1 Clone TESTI4013670 testis 5' read P
DB071609.1 Clone TESTI4014474 testis 5' read P
DB216282.1 Clone TRACH3005289 trachea 5' read P
BF767127.1 intestine
DW439570.1 liver
BG104550.1 Clone IMAGE:4421017 adrenal gland 5' read P
BQ378308.1 uterus
BQ878542.1 Clone IMAGE:6178850 ganglia 5' read P
AA224229.1 Clone IMAGE:648820 testis 5' read P
AA282814.1 Clone IMAGE:704878 lymph node 3' read
AA443680.1 Clone IMAGE:783856 embryonic tissue 3' read
AA447067.1 Clone IMAGE:783856 embryonic tissue 5' read P
AA490615.1 Clone IMAGE:824113 lymph node 3' read A
AA490806.1 Clone IMAGE:824113 lymph node 5' read P
AA683471.1 Clone IMAGE:505804 uterus 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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