> Ubiquitin specific peptidase 16 (USP16)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:142758     UniGene Hs.99819     Homo sapiens (human)   USP16 Order cDNA clone, Links
Ubiquitin specific peptidase 16 (USP16)

Human protein-coding gene USP16. Represented by 460 ESTs from 200 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 142758 - Hs.99819]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006438.1 USP16 gene product H. sapiens 100.0 822
XP_001159952.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform 3 P. troglodytes 99.5 825
NP_077220.2 Usp16 gene product M. musculus 91.2 824
NP_001083244.1 ubiquitin carboxyl-terminal hydrolase 16 X. laevis 65.3 900
NP_001139569.1 usp16 gene product D. rerio 60.3 814
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_001102149.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform 1 M. mulatta 99.0 825
XP_003895616.1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform 1 P. anubis 99.0 825

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; kidney; testis; mixed; liver; vascular; mammary gland; bladder; pineal gland; adrenal gland; mouth; muscle; spleen; larynx; thymus; lung; placenta; uncharacterized tissue; eye; intestine; ovary; trachea; connective tissue; skin; blood; embryonic tissue; prostate; nerve; esophagus; parathyroid; pharynx; lymph; ascites; uterus; heart; adipose tissue; ganglia; thyroid; lymph node; stomach; bone marrow; pancreas; cervix
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 21
Map position: 21q22.11
UniSTS entry: Chr 21 USP16
UniSTS entry: Usp16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

NM_006447.2 Homo sapiens ubiquitin specific peptidase 16 (USP16), transcript variant 1, mRNA PA
NM_001001992.1 Homo sapiens ubiquitin specific peptidase 16 (USP16), transcript variant 2, mRNA PA
AF126736.1 Homo sapiens ubiquitin processing protease (Ubp-M) mRNA, complete cds P
AK222884.1 Homo sapiens mRNA for ubiquitin specific protease 16 isoform a variant, clone: HEP20727 P
AK222681.1 Homo sapiens mRNA for ubiquitin specific protease 16 isoform a variant, clone: CBR02581 P
AK023247.1 Homo sapiens cDNA FLJ13185 fis, clone NT2RP3004209, highly similar to Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15) P
AK025104.1 Homo sapiens cDNA: FLJ21451 fis, clone COL04494, highly similar to AF126736 Homo sapiens ubiquitin processing protease (Ubp-M) mRNA PA
AK025989.1 Homo sapiens cDNA: FLJ22336 fis, clone HRC05878, highly similar to AF126736 Homo sapiens ubiquitin processing protease (Ubp-M) mRNA PA
NM_001032410.1 Homo sapiens ubiquitin specific peptidase 16 (USP16), transcript variant 3, mRNA PA
BC030777.2 Homo sapiens ubiquitin specific peptidase 16, mRNA (cDNA clone MGC:26265 IMAGE:4824914), complete cds PA
AK294284.1 Homo sapiens cDNA FLJ57270 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15) PA
AK300771.1 Homo sapiens cDNA FLJ57202 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 16 (EC 3.1.2.15) P
AK302247.1 Homo sapiens cDNA FLJ61461 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 16 (EC3.1.2.15) P
AF113219.1 Homo sapiens MSTP039 mRNA, complete cds PA
BC010375.1 Homo sapiens ubiquitin specific peptidase 16, mRNA (cDNA clone IMAGE:4283517), with apparent retained intron PA

EST sequences (10 of 460) [Show all sequences]

AA909749.1 Clone IMAGE:1521021 lung 3' read P
AI015214.1 Clone IMAGE:1624057 embryonic tissue 3' read PA
AI018586.1 Clone IMAGE:1628391 mixed 3' read A
AI076959.1 Clone IMAGE:1666838 skin 3' read A
AI125637.1 Clone IMAGE:1737184 testis 3' read PA
AI141854.1 Clone IMAGE:1691729 heart 3' read A
AI167505.1 Clone IMAGE:1661506 mixed 3' read A
BX112853.1 Clone IMAGp998J17439 eye 5' read P
AI221835.1 Clone IMAGE:1843837 mixed 3' read P
CB108488.1 Clone L3SNU475-31-C01 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help