> Ubiquitin specific peptidase 40 (USP40)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:141811     UniGene Hs.96513     Homo sapiens (human)   USP40 Links
Ubiquitin specific peptidase 40 (USP40)

Human protein-coding gene USP40. Represented by 318 ESTs from 170 cDNA libraries. Corresponds to reference sequence NM_018218.2. [UniGene 141811 - Hs.96513]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_060688.1 USP40 gene product H. sapiens 100.0 1246
NP_001185502.1 ubiquitin carboxyl-terminal hydrolase 40 isoform 1 M. musculus 84.8 1234
XP_001921353.3 PREDICTED: ubiquitin carboxyl-terminal hydrolase 40 D. rerio 57.2 1262
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
XP_516162.3 PREDICTED: ubiquitin carboxyl-terminal hydrolase 40 P. troglodytes 99.4 1246
XP_003908157.1 PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 40 P. anubis 97.7 1235

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; muscle; eye; mixed; mammary gland; testis; prostate; embryonic tissue; mouth; intestine; thymus; ovary; uncharacterized tissue; spleen; connective tissue; cervix; vascular; trachea; skin; lung; uterus; placenta; pancreas; kidney; adipose tissue; liver; stomach; ear; thyroid; parathyroid; tonsil; blood; bone; lymph node; esophagus; bladder; heart; amniotic fluid; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q37.1
UniSTS entry: Chr 2 RH94290
UniSTS entry: Chr 2 RH79707
UniSTS entry: Chr 2 RH102130
UniSTS entry: Chr 2 RH65557
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (10)

AK124094.1 Homo sapiens cDNA FLJ42100 fis, clone TESOP2006670 P
AJ583821.2 Homo sapiens mRNA for ubiquitin specific proteinase 40 (USP40 gene) P
NM_018218.2 Homo sapiens ubiquitin specific peptidase 40 (USP40), mRNA PA
BC067300.1 Homo sapiens ubiquitin specific peptidase 40, mRNA (cDNA clone IMAGE:30389677), partial cds PA
BC086855.1 Homo sapiens cDNA clone IMAGE:5833657 A
BC013305.1 Homo sapiens ubiquitin specific peptidase 40, mRNA (cDNA clone IMAGE:2960564), with apparent retained intron PA
AL833371.1 Homo sapiens mRNA; cDNA DKFZp667G1714 (from clone DKFZp667G1714) PA
AK297821.1 Homo sapiens cDNA FLJ54474 partial cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15) P
AK295112.1 Homo sapiens cDNA FLJ56772 complete cds, highly similar to Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15) P
AK001647.1 Homo sapiens cDNA FLJ10785 fis, clone NT2RP4000457, weakly similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 (EC 3.1.2.15) P

EST sequences (10 of 318) [Show all sequences]

AA987855.1 Clone IMAGE:1593953 kidney 3' read A
AA834124.1 Clone IMAGE:1422290 kidney
AI023835.1 Clone IMAGE:1642671 testis 3' read P
AI022189.1 Clone IMAGE:1654303 mixed 3' read A
AI042467.1 Clone IMAGE:1665808 skin 3' read A
AI061230.1 Clone IMAGE:1700728 kidney 3' read P
AI092382.1 Clone IMAGE:1689013 mixed 3' read A
AI138996.1 Clone IMAGE:1736101 testis 3' read A
AI139008.1 Clone IMAGE:1736126 testis 3' read A
AI140576.1 Clone IMAGE:1653527 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help