> AT rich interactive domain 5A (MRF1-like) (ARID5A)
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UGID:130876     UniGene Hs.920     Homo sapiens (human)   ARID5A Links
AT rich interactive domain 5A (MRF1-like) (ARID5A)

Human protein-coding gene ARID5A. Represented by 225 ESTs from 100 cDNA libraries. Corresponds to reference sequence NM_212481.1. [UniGene 130876 - Hs.920]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_997646.1 ARID5A gene product H. sapiens 100.0 593
NP_001165677.1 Arid5a gene product M. musculus 81.2 588
XP_003199200.1 PREDICTED: hypothetical protein LOC100462698, partial D. rerio 64.3 249
Other hits (2 of 21) [Show all]SpeciesId(%)Len(aa)
XP_515631.3 PREDICTED: AT-rich interactive domain-containing protein 5A P. troglodytes 99.2 607
XP_003909032.1 PREDICTED: AT-rich interactive domain-containing protein 5A P. anubis 97.5 593

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: uncharacterized tissue; brain; mixed; pancreas; skin; testis; blood; lung; uterus; intestine; tonsil; pharynx; ovary; mammary gland; bone marrow; eye; placenta; lymph node; prostate; thymus; connective tissue; spleen; ganglia; stomach; nerve; bone; embryonic tissue; kidney
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2q11.2
UniSTS entry: Chr 2 D2S2868
UniSTS entry: Chr 2 RH70349 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

M62324.1 Human modulator recognition factor I (MRF-1) mRNA, 3' end PA
BC047390.1 Homo sapiens AT rich interactive domain 5A (MRF1-like), mRNA (cDNA clone IMAGE:5295251) PA
AY358167.1 Homo sapiens clone DNA128322 RFVG5814 (UNQ5814) mRNA, complete cds
NM_212481.1 Homo sapiens AT rich interactive domain 5A (MRF1-like) (ARID5A), mRNA PA
AK307768.1 Homo sapiens cDNA, FLJ97716 P
AK300173.1 Homo sapiens cDNA FLJ54879 complete cds, highly similar to Homo sapiens AT rich interactive domain 5A (MRF1-like) (ARID5A), transcript variant 1, mRNA PA
AK304566.1 Homo sapiens cDNA FLJ55425 complete cds, highly similar to Homo sapiens AT rich interactive domain 5A (MRF1-like) (ARID5A), transcript variant 1, mRNA P

EST sequences (10 of 225) [Show all sequences]

AA970055.1 Clone IMAGE:1581684 mixed 3' read A
AA971304.1 Clone IMAGE:1582488 mixed 3' read A
AA992308.1 Clone IMAGE:1620484 testis 3' read
AI085152.1 Clone IMAGE:1664064 skin 3' read A
CB054796.1 Clone IMAGE:3291639 brain 5' read P
BX093619.1 Clone IMAGp998G20163_;_IMAGE:36502 brain A
AI204228.1 Clone IMAGE:1744788 lung 3' read A
AI348118.1 Clone IMAGE:1927051 intestine 3' read A
AI348120.1 Clone IMAGE:1927055 intestine 3' read A
AI358411.1 Clone IMAGE:1991664 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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