> Upstream binding transcription factor, RNA polymerase I (UBTF)
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UGID:141315     UniGene Hs.89781     Homo sapiens (human)   UBTF Order cDNA clone, Links
Upstream binding transcription factor, RNA polymerase I (UBTF)

Human protein-coding gene UBTF. Represented by 528 ESTs from 249 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 141315 - Hs.89781]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003919709.1 PREDICTED: LOW QUALITY PROTEIN: nucleolar transcription factor 1 P. anubis 100.0 764
NP_055048.1 UBTF gene product H. sapiens 100.0 763
XP_003315456.2 PREDICTED: LOW QUALITY PROTEIN: nucleolar transcription factor 1 isoform 2 P. troglodytes 99.7 763
XP_001100425.2 PREDICTED: nucleolar transcription factor 1 M. mulatta 99.7 630
XP_003358065.2 PREDICTED: nucleolar transcription factor 1-like S. scrofa 99.5 643
NP_035681.2 Ubtf gene product M. musculus 99.1 763
NP_001079429.1 nucleolar transcription factor 1-B X. laevis 81.2 700
NP_001005395.1 upstream binding transcription factor, RNA polymerase I D. rerio 73.5 734
Other hits (2 of 17) [Show all]SpeciesId(%)Len(aa)
XP_001495593.2 PREDICTED: nucleolar transcription factor 1 isoform 1 E. caballus 99.5 745
NP_001121162.1 nucleolar transcription factor 1 isoform 2 R. norvegicus 99.2 763

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; prostate; embryonic tissue; muscle; thymus; mouth; lung; liver; amniotic fluid; testis; uncharacterized tissue; eye; lymph node; mixed; intestine; uterus; skin; mammary gland; placenta; kidney; pancreas; spleen; esophagus; tonsil; blood; lymph; bladder; connective tissue; ovary; bone; trachea; heart; stomach; thyroid; larynx; salivary gland; bone marrow; ascites; cervix; vascular; pituitary gland; nerve; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q21.31
UniSTS entry: Chr 17 SHGC-30675 [Map Viewer]
UniSTS entry: Chr 17 RH70694 [Map Viewer]
UniSTS entry: Chr 17 D17S2047 [Map Viewer]
UniSTS entry: Chr 17 A009G46
UniSTS entry: Chr 17 MARC_17735-17736:1031759262:1
UniSTS entry: Chr 17 STS-N39596
UniSTS entry: Chr 17 RH93951
UniSTS entry: Chr 17 G15974
UniSTS entry: Chr 17 MARC_10313-10314:998934876:1
UniSTS entry: Chr 17 UBTF__5182
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (17)

BC042297.1 Homo sapiens upstream binding transcription factor, RNA polymerase I, mRNA (cDNA clone MGC:48801 IMAGE:4509695), complete cds PA
NM_014233.3 Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 1, mRNA PA
NM_001076683.1 Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 2, mRNA PA
NM_001076684.2 Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 3, mRNA PA
AK292577.1 Homo sapiens cDNA FLJ77827 complete cds, highly similar to Human mRNA for upstream binding factor (hUBF) P
AK292518.1 Homo sapiens cDNA FLJ77758 complete cds, highly similar to Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), mRNA P
AK291733.1 Homo sapiens cDNA FLJ75058 complete cds, highly similar to Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), mRNA P
AK308321.1 Homo sapiens cDNA, FLJ98269 P
X56687.1 H.sapiens mRNA for autoantigen NOR-90 P
AK298008.1 Homo sapiens cDNA FLJ53818 complete cds, highly similar to Nucleolar transcription factor 1 P
AK296917.1 Homo sapiens cDNA FLJ53802 complete cds, highly similar to Nucleolar transcription factor 1 PA
BC031423.1 Homo sapiens upstream binding transcription factor, RNA polymerase I, mRNA (cDNA clone IMAGE:4341587), partial cds P
AF289595.1 Homo sapiens clone pp7879 unknown mRNA A
X56688.1 H.sapiens mRNA autoantigen NOR-90 3'-untranslated region
M61724.1 Human UBF2 transcription factor mRNA
X53461.1 Human mRNA for upstream binding factor (hUBF) P
NR_045058.1 Homo sapiens upstream binding transcription factor, RNA polymerase I (UBTF), transcript variant 4, non-coding RNA PA

EST sequences (10 of 528) [Show all sequences]

AA961221.1 Clone IMAGE:1569841 lung 3' read
AA974737.1 Clone IMAGE:1578299 mixed 3' read
R19318.1 Clone IMAGE:33208 brain 5' read
AI143471.1 Clone IMAGE:1690699 mixed 3' read A
BX110840.1 Clone IMAGp998J19155_;_IMAGE:33208 brain A
BX091747.1 Clone IMAGp998I20196_;_IMAGE:136795 placenta PA
AI083867.1 Clone IMAGE:1751227 brain 3' read A
AI263742.1 Clone IMAGE:1856043 mixed 3' read P
AI265796.1 Clone IMAGE:2006545 ovary 3' read A
CB121704.1 Clone B1T694954-12-B09 brain 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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