> Vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39)
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UGID:141123     UniGene Hs.88025     Homo sapiens (human)   VPS39 Order cDNA clone, Links
Vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39)

Human protein-coding gene VPS39. Represented by 468 ESTs from 242 cDNA libraries. Corresponds to reference sequence NM_015289.2. [UniGene 141123 - Hs.88025]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_510331.3 PREDICTED: vam6/Vps39-like protein P. troglodytes 100.0 874
NP_056104.2 VPS39 gene product H. sapiens 100.0 874
XP_001102792.1 PREDICTED: vacuolar protein sorting 39 isoform 1 M. mulatta 99.8 885
XP_003900874.1 PREDICTED: vam6/Vps39-like protein isoform 2 P. anubis 99.8 885
NP_001193173.1 vam6/Vps39-like protein B. taurus 99.5 874
XP_004010526.1 PREDICTED: vam6/Vps39-like protein O. aries 99.5 874
NP_671495.1 vam6/Vps39-like protein isoform 1 M. musculus 98.8 885
NP_001091406.1 uncharacterized protein LOC100049095 X. laevis 94.7 94
NP_001107012.2 vps39 gene product D. rerio 87.6 870
NP_650702.1 CG7146 D. melanogaster 57.1 266
Other hits (2 of 34) [Show all]SpeciesId(%)Len(aa)
XP_544640.2 PREDICTED: vam6/Vps39-like protein isoform 2 C. lupus familiaris 99.4 874
XP_002718008.1 PREDICTED: vacuolar protein sorting 39 O. cuniculus 99.2 886

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uncharacterized tissue; uterus; esophagus; placenta; larynx; blood; parathyroid; pituitary gland; lung; muscle; lymph node; mixed; embryonic tissue; mammary gland; pancreas; thyroid; connective tissue; kidney; skin; intestine; thymus; eye; prostate; mouth; bladder; bone; epididymis; liver; umbilical cord; lymph; tonsil; ascites; spleen; stomach; cervix; pharynx; bone marrow; ganglia; nerve; heart; adrenal gland; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 15
Map position: 15q15.1
UniSTS entry: Chr 15 A002O28 [Map Viewer]
UniSTS entry: Chr 15 D15S1187 [Map Viewer]
UniSTS entry: Chr 15 RH79193
UniSTS entry: Chr 15 D15S1198 [Map Viewer]
UniSTS entry: Chr 15 D15S897
UniSTS entry: Chr 15 A008B09 [Map Viewer]
UniSTS entry: Chr 15 D15S793
UniSTS entry: Chr 15 RH46885 [Map Viewer]
UniSTS entry: Chr 15 D15S802
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

AB018313.2 Homo sapiens mRNA for KIAA0770 protein, partial cds P
BX537404.1 Homo sapiens mRNA; cDNA DKFZp686A2451 (from clone DKFZp686A2451); complete cds PA
AL117456.1 Homo sapiens mRNA; cDNA DKFZp586K2217 (from clone DKFZp586K2217) A
NM_015289.2 Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae) (VPS39), mRNA PA
AK128403.1 Homo sapiens cDNA FLJ46546 fis, clone THYMU3038214, highly similar to Vam6/Vps39-like protein P
AK124255.1 Homo sapiens cDNA FLJ42261 fis, clone TKIDN2012034
AK124199.1 Homo sapiens cDNA FLJ42205 fis, clone THYMU2035554
AF281052.1 Homo sapiens VPS39 mRNA, complete cds P
BC068559.1 Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae), mRNA (cDNA clone MGC:87483 IMAGE:5295166), complete cds PA
AK025334.1 Homo sapiens cDNA: FLJ21681 fis, clone COL09261 PA
AF280814.1 Homo sapiens Vam6/Vps39-like protein mRNA, complete cds P
BC015817.2 Homo sapiens vacuolar protein sorting 39 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3938667), partial cds PA
AK074193.1 Homo sapiens cDNA FLJ23613 fis, clone ADKA03214 A

EST sequences (10 of 468) [Show all sequences]

R14340.1 Clone IMAGE:28542 brain 5' read
R16226.1 Clone IMAGE:53288 brain 5' read
AA991779.1 Clone IMAGE:1623849 embryonic tissue 3' read A
AI017435.1 Clone IMAGE:1635700 kidney 3' read
AI027386.1 Clone IMAGE:1650136 parathyroid 3' read A
AI075752.1 Clone IMAGE:1676888 embryonic tissue 3' read
AA922957.1 Clone IMAGE:1519965 uncharacterized tissue 3' read A
BX113839.1 Clone IMAGp998I22699_;_IMAGE:310749 skin
AI174386.1 Clone IMAGE:1701206 kidney 3' read
AI207802.1 Clone IMAGE:1953050 brain 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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