> Rho guanine nucleotide exchange factor (GEF) 16 (ARHGEF16)
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UGID:141064     UniGene Hs.87435     Homo sapiens (human)   ARHGEF16 Order cDNA clone, Links
Rho guanine nucleotide exchange factor (GEF) 16 (ARHGEF16)

Human protein-coding gene ARHGEF16. Represented by 127 ESTs from 76 cDNA libraries. Corresponds to reference sequence NM_014448.3. [UniGene 141064 - Hs.87435]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055263.2 ARHGEF16 gene product H. sapiens 100.0 708
NP_001106215.1 Arhgef16 gene product M. musculus 84.6 712
NP_001116755.1 rho guanine nucleotide exchange factor 16 D. rerio 60.4 599
NP_494707.1 Protein EPHX-1, isoform b C. elegans 45.1 233
Other hits (2 of 24) [Show all]SpeciesId(%)Len(aa)
XP_001159969.3 PREDICTED: rho guanine nucleotide exchange factor 16 P. troglodytes 98.9 660
XP_001082733.1 PREDICTED: rho guanine nucleotide exchange factor 16 isoform 4 M. mulatta 97.6 708

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; uterus; brain; mixed; mouth; ganglia; skin; eye; testis; trachea; stomach; placenta; intestine; pancreas; muscle; prostate; lung; uncharacterized tissue; kidney; ascites; ovary; cervix; mammary gland; nerve; esophagus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1p36.3
UniSTS entry: Chr 1 D1S3709E
UniSTS entry: Chr 1 SHGC-74074 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

BT007270.1 Homo sapiens Rho guanine exchange factor (GEF) 16 mRNA, complete cds P
BC051838.1 Homo sapiens Rho guanine exchange factor (GEF) 16, mRNA (cDNA clone MGC:60142 IMAGE:6191377), complete cds PA
NM_014448.3 Homo sapiens Rho guanine nucleotide exchange factor (GEF) 16 (ARHGEF16), mRNA PA
BC002681.1 Homo sapiens Rho guanine exchange factor (GEF) 16, mRNA (cDNA clone MGC:3381 IMAGE:3613623), complete cds PA
AK310408.1 Homo sapiens cDNA, FLJ17450 P
AK095984.1 Homo sapiens cDNA FLJ38665 fis, clone HLUNG2003378, highly similar to Rho guanine nucleotide exchange factor 16 P
AK091910.1 Homo sapiens cDNA FLJ34591 fis, clone KIDNE2008975, highly similar to Homo sapiens mRNA for Neuroblastoma P
AK296150.1 Homo sapiens cDNA FLJ52867 complete cds, highly similar to Rho guanine nucleotide exchange factor 16 P
D89016.1 Homo sapiens nbr mRNA for neuroblastoma, complete cds P

EST sequences (10 of 127) [Show all sequences]

CB049549.1 Clone IMAGE:3271412 prostate 3' read A
CB049550.1 Clone IMAGE:3271412 prostate 5' read A
BX110986.1 Clone IMAGp998A141860_;_IMAGE:756373 ovary A
AI240397.1 Clone IMAGE:1856472 mixed 3' read A
AI446285.1 Clone IMAGE:2143138 pancreas 3' read A
AI474419.1 Clone IMAGE:2118816 prostate 3' read A
AI492124.1 Clone IMAGE:2108065 uncharacterized tissue 3' read A
AI631436.1 Clone IMAGE:2303306 uncharacterized tissue 3' read A
AI631819.1 Clone IMAGE:2300192 kidney 3' read A
AI739406.1 Clone IMAGE:2391604 intestine 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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