> ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 (ATP6V1C1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:140985     UniGene Hs.86905     Homo sapiens (human)   ATP6V1C1 Order cDNA clone, Links
ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 (ATP6V1C1)

Human protein-coding gene ATP6V1C1. Represented by 567 ESTs from 232 cDNA libraries. Corresponds to reference sequence NM_001695.4. [UniGene 140985 - Hs.86905]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001083973.2 PREDICTED: v-type proton ATPase subunit C 1 isoform 2 M. mulatta 100.0 381
XP_003903096.1 PREDICTED: V-type proton ATPase subunit C 1 isoform 1 P. anubis 100.0 381
XP_001155312.1 PREDICTED: V-type proton ATPase subunit C 1 isoform 5 P. troglodytes 100.0 381
NP_001686.1 ATP6V1C1 gene product H. sapiens 100.0 381
XP_002710769.1 PREDICTED: ATPase, H+ transporting, lysosomal V1 subunit C1 O. cuniculus 100.0 381
XP_859004.1 PREDICTED: V-type proton ATPase subunit C 1 isoform 7 C. lupus familiaris 99.7 381
NP_788849.1 ATP6V1C1 gene product B. taurus 99.7 381
XP_004011849.1 PREDICTED: V-type proton ATPase subunit C 1 O. aries 99.7 381
NP_079770.2 Atp6v1c1 gene product M. musculus 99.2 381
NP_001088261.1 V-type proton ATPase subunit C 1 X. laevis 96.1 381
NP_958479.1 atp6v1c1a gene product D. rerio 91.9 382
NP_477266.1 vacuolar H[+] ATPase 44kD C subunit, isoform A D. melanogaster 69.7 383
NP_001023451.1 Protein VHA-11, isoform a C. elegans 59.5 378
NP_012843.1 Vma5p S. cerevisiae 49.5 200
NP_563916.1 V-type proton ATPase subunit C A. thaliana 45.4 172
Other hits (2 of 41) [Show all]SpeciesId(%)Len(aa)
NP_001011992.1 Atp6v1c1 gene product R. norvegicus 99.0 381
XP_001494151.1 PREDICTED: v-type proton ATPase subunit C 1-like E. caballus 99.0 381

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; intestine; bone marrow; placenta; lymph node; ovary; kidney; liver; stomach; pharynx; skin; pituitary gland; heart; spleen; esophagus; vascular; trachea; salivary gland; larynx; cervix; eye; mouth; uterus; lung; testis; prostate; mixed; uncharacterized tissue; embryonic tissue; adrenal gland; thymus; mammary gland; pancreas; nerve; blood; ganglia; bladder; connective tissue; ear; ascites; muscle; bone; thyroid; spinal cord; lymph
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 8
Map position: 8q22.3
UniSTS entry: Chr 8 SHGC-2582 [Map Viewer]
UniSTS entry: Chr 8 D8S1610 [Map Viewer]
UniSTS entry: RH137726
UniSTS entry: Chr 8 STS-N33243
UniSTS entry: Chr 8 RH78580 [Map Viewer]
UniSTS entry: Chr 8 ATP6V1C1__4398
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

J05682.1 Human subunit C of V-ATPase (vat C) mRNA, 3' end P
BX648079.1 Homo sapiens mRNA; cDNA DKFZp686N08183 (from clone DKFZp686N08183) PA
NM_001695.4 Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 (ATP6V1C1), mRNA P
AK000064.1 Homo sapiens cDNA FLJ20057 fis, clone COL01311, highly similar to J05682 Human subunit C of V-ATPase PA
BC010960.1 Homo sapiens ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1, mRNA (cDNA clone MGC:13646 IMAGE:4108687), complete cds PA
AK308632.1 Homo sapiens cDNA, FLJ98673 P
AK090702.1 Homo sapiens cDNA FLJ33383 fis, clone BRACE2006514
AK298617.1 Homo sapiens cDNA FLJ52191 complete cds, highly similar to Vacuolar ATP synthase subunit C (EC 3.6.3.14) P
X69151.1 H.sapiens mRNA for subunit C of vacuolar proton-ATPase V1 domain P

EST sequences (10 of 567) [Show all sequences]

AA968820.1 Clone IMAGE:1570052 lung 3' read A
AA970447.1 Clone IMAGE:1580694 mixed 3' read A
AA999710.1 Clone IMAGE:1636301 kidney 3' read A
R19001.1 Clone IMAGE:33501 brain 5' read
AA947325.1 Clone IMAGE:1589443 kidney 3' read A
AI091250.1 Clone IMAGE:1567298 mixed 3' read A
AI093229.1 Clone IMAGE:1695253 uterus 3' read A
AA923126.1 Clone IMAGE:1521357 lung 3' read
AI128845.1 Clone IMAGE:1694441 heart 3' read A
BX091643.1 Clone IMAGp998O10594_;_IMAGE:270561 skin


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help