> Small nuclear ribonucleoprotein polypeptides B and B1 (SNRPB)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:140759     UniGene Hs.83753     Homo sapiens (human)   SNRPB Order cDNA clone, Links
Small nuclear ribonucleoprotein polypeptides B and B1 (SNRPB)

Human protein-coding gene SNRPB. Represented by 1787 ESTs from 355 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 140759 - Hs.83753]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001113951.1 PREDICTED: small nuclear ribonucleoprotein-associated protein B' isoform 2 M. mulatta 100.0 239
XP_003905022.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' isoform 2 P. anubis 100.0 239
XP_525398.2 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' isoform 3 P. troglodytes 100.0 239
NP_937859.1 SNRPB gene product H. sapiens 100.0 239
XP_861671.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' isoform 4 C. lupus familiaris 100.0 239
XP_001497533.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like isoform 2 E. caballus 100.0 239
NP_001029903.1 SNRPB gene product B. taurus 100.0 239
XP_004014438.1 PREDICTED: small nuclear ribonucleoprotein-associated protein B' isoform 1 O. aries 100.0 239
NP_033251.1 Snrpb gene product M. musculus 100.0 230
NP_599185.1 Snrpb gene product R. norvegicus 100.0 230
NP_991230.1 snrpb gene product D. rerio 97.5 238
NP_001080161.1 small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51 X. laevis 96.6 235
NP_476921.1 small ribonucleoprotein particle protein SmB, isoform A D. melanogaster 71.9 198
NP_493348.1 Protein SNR-2 C. elegans 59.5 158
NP_193777.1 small nuclear ribonucleoprotein associated protein B A. thaliana 59.2 255
Other hits (2 of 44) [Show all]SpeciesId(%)Len(aa)
XP_002714848.1 PREDICTED: small nuclear ribonucleoprotein polypeptide B/B-like O. cuniculus 98.8 239
NP_001029144.1 SNRPB gene product M. domestica 98.3 239

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: skin; lung; brain; embryonic tissue; placenta; pancreas; uterus; eye; liver; intestine; prostate; uncharacterized tissue; kidney; blood; mixed; ovary; tonsil; muscle; mammary gland; stomach; lymph node; trachea; salivary gland; ascites; thyroid; lymph; nerve; connective tissue; adipose tissue; testis; heart; larynx; bone; pineal gland; cervix; adrenal gland; parathyroid; ganglia; umbilical cord; pituitary gland; bladder; vascular; amniotic fluid; thymus; bone marrow; pharynx; spleen; mouth; epididymis; esophagus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p13
UniSTS entry: Chr 20 MARC_5069-5070:996690109:1
UniSTS entry: Chr 20 WI-18905 [Map Viewer]
UniSTS entry: Chr 20 D20S1032 [Map Viewer]
UniSTS entry: MARC_54547-54548:1155053028:1
UniSTS entry: Chr 1 D11S3114
UniSTS entry: MARC_5181-5182:966894595:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

M34081.1 Human small nuclear ribonucleoprotein particle SmB mRNA, 3' end P
M34082.1 Human small nuclear ribonucleoprotein particle SmB' mRNA, 3' end P
X17568.1 H.sapiens RNA for snRNP protein B` P
NM_003091.3 Homo sapiens small nuclear ribonucleoprotein polypeptides B and B1 (SNRPB), transcript variant 2, mRNA P
NM_198216.1 Homo sapiens small nuclear ribonucleoprotein polypeptides B and B1 (SNRPB), transcript variant 1, mRNA P
CR456969.1 Homo sapiens full open reading frame cDNA clone RZPDo834B115D for gene SNRPB, small nuclear ribonucleoprotein polypeptides B and B1; complete cds, incl. stopcodon P
BC080516.1 Homo sapiens small nuclear ribonucleoprotein polypeptides B and B1, mRNA (cDNA clone MGC:99669 IMAGE:2822685), complete cds PA
AY742712.1 Homo sapiens small nuclear ribonucleoprotein polypeptide B mRNA, complete cds P
J04564.1 Human snRNP polypeptide B mRNA, complete cds P
AK307266.1 Homo sapiens cDNA, FLJ97214
AK307093.1 Homo sapiens cDNA, FLJ97041
AK312620.1 Homo sapiens cDNA, FLJ93004, Homo sapiens small nuclear ribonucleoprotein polypeptides B and B1 (SNRPB), mRNA P
AK301206.1 Homo sapiens cDNA FLJ56740 complete cds, highly similar to Small nuclear ribonucleoprotein-associatedproteins B and B' P
AK301034.1 Homo sapiens cDNA FLJ60171 complete cds, highly similar to Small nuclear ribonucleoprotein-associated protein B P
X17567.1 H.sapiens RNA for snRNP protein B P
X15893.1 Human B cod gene for B/B' snRNP associated protein P

EST sequences (10 of 1787) [Show all sequences]

AA961242.1 Clone IMAGE:1552111 uncharacterized tissue 3' read
AA866081.1 Clone IMAGE:1459538 kidney 3' read
AA865003.1 Clone IMAGE:1456535 kidney 3' read A
AA977437.1 Clone IMAGE:1591070 kidney 3' read A
R15244.1 Clone IMAGE:29658 brain 5' read P
R17082.1 Clone IMAGE:129832 mixed 3' read A
AA910672.1 Clone IMAGE:1520632 kidney 3' read
AA927563.1 Clone IMAGE:1552650 uncharacterized tissue 3' read
AI023673.1 Clone IMAGE:1651925 mixed 3' read A
AI025421.1 Clone IMAGE:1647413 parathyroid 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help