> Chromosome 11 open reading frame 54 (C11orf54)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:132337     UniGene Hs.8360     Homo sapiens (human)   C11orf54 Order cDNA clone, Links
Chromosome 11 open reading frame 54 (C11orf54)

Human protein-coding gene C11orf54. Represented by 301 ESTs from 145 cDNA libraries. Corresponds to reference sequence NM_014039.2. [UniGene 132337 - Hs.8360]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001141119.1 PREDICTED: ester hydrolase C11orf54 homolog isoform 9 P. troglodytes 100.0 314
NP_054758.2 C11orf54 gene product H. sapiens 100.0 264
NP_598493.1 4931406C07Rik gene product M. musculus 90.2 314
NP_001086047.1 ester hydrolase C11orf54 homolog X. laevis 68.9 308
NP_997781.1 zgc:85789 gene product D. rerio 66.2 310
NP_505382.2 Protein C24B5.4 C. elegans 52.3 153
NP_612081.1 CG9119 D. melanogaster 51.6 307
Other hits (2 of 38) [Show all]SpeciesId(%)Len(aa)
XP_001087199.1 PREDICTED: ester hydrolase C11orf54 isoform 6 M. mulatta 99.0 314
XP_003910599.1 PREDICTED: LOW QUALITY PROTEIN: ester hydrolase C11orf54 homolog P. anubis 98.4 314

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: kidney; mixed; brain; uncharacterized tissue; eye; stomach; uterus; pharynx; ovary; placenta; liver; esophagus; skin; lymph node; embryonic tissue; vascular; cervix; blood; pituitary gland; thymus; trachea; prostate; testis; lung; adipose tissue; nerve; mammary gland; bone marrow; intestine; muscle; connective tissue; umbilical cord; pancreas; epididymis; thyroid; heart; lymph; ganglia; bone; parathyroid
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q21
UniSTS entry: Chr 11 STS-T40968 [Map Viewer]
UniSTS entry: Chr 11 RH98894
UniSTS entry: Chr 11 RH46581
UniSTS entry: Chr 1 L17809
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

BC046477.1 Homo sapiens chromosome 11 open reading frame 54, mRNA (cDNA clone IMAGE:4831227), with apparent retained intron PA
AK129932.1 Homo sapiens cDNA FLJ26422 fis, clone KDN00825 P
AY203960.1 Homo sapiens LP4947 mRNA, complete cds PA
CR533538.1 Homo sapiens full open reading frame cDNA clone RZPDo834F0519D for gene PTD012, PTD012 protein; complete cds, incl. stopcodon P
NM_014039.2 Homo sapiens chromosome 11 open reading frame 54 (C11orf54), mRNA PA
AL136605.1 Homo sapiens mRNA; cDNA DKFZp564H1122 (from clone DKFZp564H1122); complete cds PA
AK225977.1 Homo sapiens mRNA for hypothetical protein LOC28970 variant, clone: FCC112C11 PA
BC007110.1 Homo sapiens chromosome 11 open reading frame 54, mRNA (cDNA clone IMAGE:4291902), partial cds PA
BC012298.1 Homo sapiens chromosome 11 open reading frame 54, mRNA (cDNA clone MGC:17614 IMAGE:3852558), complete cds PA
AK055836.1 Homo sapiens cDNA FLJ31274 fis, clone KIDNE2006334
AK292215.1 Homo sapiens cDNA FLJ78404 complete cds P
AK291833.1 Homo sapiens cDNA FLJ77502 complete cds P
AF092133.1 Homo sapiens PTD012 mRNA, complete cds P

EST sequences (10 of 301) [Show all sequences]

AA954647.1 Clone IMAGE:1554891 kidney 3' read A
AA864999.1 Clone IMAGE:1456527 kidney 3' read
AA973822.1 Clone IMAGE:1569271 lung 3' read
AA992566.1 Clone IMAGE:1623989 embryonic tissue 3' read A
AA999724.1 Clone IMAGE:1636336 kidney 3' read
AI017403.1 Clone IMAGE:1635334 kidney 3' read A
AI079270.1 Clone IMAGE:1677063 embryonic tissue 3' read A
AI083528.1 Clone IMAGE:1662165 mixed 3' read A
AI148794.1 Clone IMAGE:1713883 placenta 3' read A
AI214458.1 Clone IMAGE:1840402 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help