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Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (SEMA3B)
Human protein-coding gene SEMA3B. Represented by 402 ESTs from 174 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 140613 - Hs.82222]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
|
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SEMA3B gene product |
H. sapiens |
100.0 |
748 |
|
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Sema3b gene product |
M. musculus |
92.5 |
748 |
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semaphorin-3B precursor |
D. rerio |
72.5 |
756 |
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sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A precursor |
X. laevis |
60.3 |
761 |
| Other hits (2 of 20) [Show all] | Species | Id(%) | Len(aa) |
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PREDICTED: LOW QUALITY PROTEIN: semaphorin-3B |
P. troglodytes |
99.3 |
683 |
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PREDICTED: semaphorin-3B isoform 1 |
M. mulatta |
98.9 |
634 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
placenta; brain; lung; ovary; intestine; uncharacterized tissue; mixed; uterus; pancreas; muscle; blood; adrenal gland; eye; stomach; testis; bone marrow; ganglia; prostate; mammary gland; liver; spinal cord; bladder; skin; cervix; ascites; connective tissue; nerve; kidney; embryonic tissue; heart; vascular; bone; adipose tissue |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (13)
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BC044602.1 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B, mRNA (cDNA clone IMAGE:4815097), partial cds |
PA |
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NM_004636.2 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (SEMA3B), transcript variant 1, mRNA |
PA |
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NM_001005914.1 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B (SEMA3B), transcript variant 2, mRNA |
PA |
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U28369.1 |
Homo sapiens semaphorin V mRNA, complete cds |
P |
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AB209322.1 |
Homo sapiens mRNA for semaphorin 3B isoform 2 precursor variant protein |
P |
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AF217991.1 |
Homo sapiens clone PP1737 unknown mRNA |
PA |
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BC009113.1 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B, mRNA (cDNA clone MGC:18122 IMAGE:4153377), complete cds |
PA |
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BC013975.2 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B, mRNA (cDNA clone MGC:12697 IMAGE:4121913), complete cds |
PA |
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AK308875.1 |
Homo sapiens cDNA, FLJ98916 |
P |
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BC024220.2 |
Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B, mRNA (cDNA clone MGC:1483 IMAGE:3009807), complete cds |
PA |
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AB083186.1 |
Homo sapiens SEMA3B mRNA for semaphorin 3B, complete cds |
P |
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AK092182.1 |
Homo sapiens cDNA FLJ34863 fis, clone NT2NE2014013, moderately similar to SEMAPHORIN 3B PRECURSOR |
P |
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AK293678.1 |
Homo sapiens cDNA FLJ55830 complete cds, highly similar to Semaphorin-3B precursor |
P |
EST sequences (10 of 402) [Show all sequences]
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AI123782.1 |
Clone IMAGE:1567199 |
mixed |
3' read |
A |
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AI142277.1 |
Clone IMAGE:1839852 |
testis |
5' read |
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CB049768.1 |
Clone IMAGE:3271572 |
prostate |
3' read |
PA |
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CB049769.1 |
Clone IMAGE:3271572 |
prostate |
5' read |
P |
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CB051672.1 |
Clone IMAGE:3289725 |
uncharacterized tissue |
3' read |
A |
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CB054266.1 |
Clone IMAGE:3291314 |
brain |
5' read |
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BX113879.1 |
Clone IMAGp998C03197_;_IMAGE:137018 |
placenta |
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P |
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AI250960.1 |
Clone IMAGE:2007193 |
ovary |
3' read |
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AI251044.1 |
Clone IMAGE:2006779 |
ovary |
3' read |
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AI251304.1 |
Clone IMAGE:1985156 |
ovary |
3' read |
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Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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