> EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1)
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UGID:139967     UniGene Hs.76224     Homo sapiens (human)   EFEMP1 Order cDNA clone, Links
EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1)

Human protein-coding gene EFEMP1. Represented by 1267 ESTs from 274 cDNA libraries. EST representation biased toward neonate. Corresponds to 2 reference sequences (different isoforms). [UniGene 139967 - Hs.76224]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_001034437.1 EFEMP1 gene product H. sapiens 100.0 492
XP_001156698.1 PREDICTED: EGF containing fibulin-like extracellular matrix protein 1 isoform 7 P. troglodytes 99.8 622
XP_003908721.1 PREDICTED: EGF-containing fibulin-like extracellular matrix protein 1 isoform 2 P. anubis 99.5 622
NP_666127.2 Efemp1 gene product M. musculus 97.8 492
NP_001008587.1 efemp2a gene product D. rerio 60.1 418
NP_001089430.1 fibulin 1 precursor X. laevis 45.9 351
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_531834.1 PREDICTED: EGF containing fibulin-like extracellular matrix protein 1 C. lupus familiaris 98.8 501
XP_001917632.1 PREDICTED: EGF-containing fibulin-like extracellular matrix protein 1-like E. caballus 98.8 497

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: neonate [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: connective tissue; vascular; brain; placenta; uncharacterized tissue; lung; umbilical cord; mixed; eye; kidney; skin; testis; uterus; bone marrow; mouth; prostate; embryonic tissue; mammary gland; intestine; thyroid; muscle; ear; stomach; blood; ovary; cervix; ganglia; larynx; thymus; heart; pancreas; trachea; pharynx; liver; pituitary gland; spleen; esophagus; bladder; bone; adrenal gland; lymph node; adipose tissue; nerve; parathyroid; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p16
UniSTS entry: Chr 2 D2S2626 [Map Viewer]
UniSTS entry: Chr 2 D2S2864 [Map Viewer]
UniSTS entry: Chr 2 RH70532 [Map Viewer]
UniSTS entry: Chr 2 SHGC-12903 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (12)

AB209212.1 Homo sapiens mRNA for EGF-containing fibulin-like extracellular matrix protein 1 isoform b variant protein P
BC098561.1 Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1, mRNA (cDNA clone MGC:111353 IMAGE:30561133), complete cds PA
NM_001039349.2 Homo sapiens EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 3, mRNA PA
NM_001039348.2 Homo sapiens EGF containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 2, mRNA PA
BC014410.1 Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1, mRNA (cDNA clone MGC:19906 IMAGE:4549067), complete cds PA
AK293058.1 Homo sapiens cDNA FLJ77823 complete cds, highly similar to Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1, transcript variant 3, mRNA P
AK290599.1 Homo sapiens cDNA FLJ77681 complete cds, highly similar to Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 1, mRNA P
U03877.1 Human extracellular protein (S1-5) mRNA, complete cds P
AK312639.1 Homo sapiens cDNA, FLJ93024, highly similar to Homo sapiens EGF-containing fibulin-like extracellular matrix protein 1 (EFEMP1), transcript variant 1, mRNA P
AK092854.1 Homo sapiens cDNA FLJ35535 fis, clone SPLEN2002419, highly similar to EGF-containing fibulin-like extracellular matrix protein 1 precursor P
AK301531.1 Homo sapiens cDNA FLJ55670 complete cds, highly similar to EGF-containing fibulin-like extracellularmatrix protein 1 precursor P
AK301402.1 Homo sapiens cDNA FLJ53670 complete cds, highly similar to EGF-containing fibulin-like extracellularmatrix protein 1 precursor PA

EST sequences (10 of 1267) [Show all sequences]

AA968580.1 Clone IMAGE:1578314 mixed 3' read A
AA971133.1 Clone IMAGE:1582340 mixed 3' read P
AI004328.1 Clone IMAGE:1631857 mammary gland 3' read A
AI028458.1 Clone IMAGE:1646224 parathyroid 3' read
AI040898.1 Clone IMAGE:1647927 parathyroid 3' read
AI056416.1 Clone IMAGE:1669230 brain 3' read P
AI081143.1 Clone IMAGE:1680310 skin 3' read A
AI096430.1 Clone IMAGE:1686004 brain 3' read A
AI127691.1 Clone IMAGE:1710744 uterus 3' read P
AI128067.1 Clone IMAGE:1712756 uterus 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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