> Cadherin 5, type 2 (vascular endothelium) (CDH5)
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UGID:139966     UniGene Hs.76206     Homo sapiens (human)   CDH5 Order cDNA clone, Links
Cadherin 5, type 2 (vascular endothelium) (CDH5)

Human protein-coding gene CDH5. Represented by 346 ESTs from 105 cDNA libraries. Corresponds to reference sequence NM_001795.3. [UniGene 139966 - Hs.76206]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_523383.3 PREDICTED: cadherin-5 isoform 4 P. troglodytes 100.0 783
NP_001786.2 CDH5 gene product H. sapiens 100.0 783
NP_033998.2 Cdh5 gene product M. musculus 78.9 783
NP_001131054.1 cadherin-20 precursor X. laevis 47.3 296
XP_003198891.1 PREDICTED: cadherin-22-like, partial D. rerio 47.1 208
Other hits (2 of 19) [Show all]SpeciesId(%)Len(aa)
XP_001082641.1 PREDICTED: cadherin-5 isoform 3 M. mulatta 99.0 784
XP_003917032.1 PREDICTED: cadherin-5 P. anubis 99.0 784

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: placenta; brain; testis; vascular; uterus; mixed; stomach; pharynx; mammary gland; ovary; intestine; heart; muscle; embryonic tissue; connective tissue; uncharacterized tissue; trachea; thyroid; lung; mouth; prostate; thymus; pancreas; kidney; eye; nerve; ganglia; bone; ear; umbilical cord; spleen
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q22.1
UniSTS entry: Chr 16 D16S3319 [Map Viewer]
UniSTS entry: Chr 16 SHGC-60813 [Map Viewer]
UniSTS entry: Chr 16 CDH5_1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (13)

NM_001795.3 Homo sapiens cadherin 5, type 2 (vascular endothelium) (CDH5), mRNA PA
AB035304.1 Homo sapiens CDH5 mRNA for cadherin-5, complete cds P
AB209908.1 Homo sapiens mRNA for cadherin 5, type 2 preproprotein variant protein P
BC096363.3 Homo sapiens cadherin 5, type 2 (vascular endothelium), mRNA (cDNA clone MGC:117070 IMAGE:40012042), complete cds P
BC096365.1 Homo sapiens cadherin 5, type 2 (vascular endothelium), mRNA (cDNA clone MGC:117072 IMAGE:40012047), complete cds P
BC096364.3 Homo sapiens cadherin 5, type 2 (vascular endothelium), mRNA (cDNA clone MGC:117071 IMAGE:40012045), complete cds P
BC117520.2 Homo sapiens cadherin 5, type 2 (vascular endothelium), mRNA (cDNA clone MGC:117073 IMAGE:40012053), complete cds P
X59796.1 H.sapiens mRNA for cadherin-5 P
AK300461.1 Homo sapiens cDNA FLJ51093 complete cds, highly similar to Cadherin-5 precursor P
AK300322.1 Homo sapiens cDNA FLJ51088 complete cds, highly similar to Cadherin-5 precursor P
AK300299.1 Homo sapiens cDNA FLJ51087 complete cds, highly similar to Cadherin-5 precursor P
X79981.1 H.sapiens VE-cadherin mRNA PA
U84722.1 Human vascular endothelial cadherin mRNA, complete cds P

EST sequences (10 of 346) [Show all sequences]

AA903073.1 Clone IMAGE:1516979 uncharacterized tissue 3' read
AI127448.1 Clone IMAGE:1705925 heart 3' read A
R23761.1 Clone IMAGE:131675 placenta 3' read A
R23821.1 Clone IMAGE:131675 placenta 5' read
CB049998.1 Clone IMAGE:3271757 prostate 3' read A
CB049999.1 Clone IMAGE:3271757 prostate 5' read
R24512.1 Clone IMAGE:131818 placenta 3' read A
R24615.1 Clone IMAGE:131818 placenta 5' read
AI168554.1 Clone IMAGE:1678022 mixed 3' read A
BX090581.1 Clone IMAGp998O24274_;_IMAGE:46798 brain A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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