> Orthodenticle homeobox 1 (OTX1)
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UGID:5798177     UniGene Hs.734360     Homo sapiens (human)   OTX1 Order cDNA clone, Links
Orthodenticle homeobox 1 (OTX1)

Human protein-coding gene OTX1. Represented by 38 ESTs from 31 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 5798177 - Hs.734360]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001084150.1 PREDICTED: homeobox protein OTX1-like isoform 3 M. mulatta 100.0 353
NP_055377.1 OTX1 gene product H. sapiens 100.0 353
NP_035153.1 Otx1 gene product M. musculus 98.0 354
NP_001081009.1 orthodenticle homeobox 1 X. laevis 85.2 338
NP_571325.2 otx1b gene product D. rerio 84.8 322
Other hits (2 of 25) [Show all]SpeciesId(%)Len(aa)
XP_001917473.1 PREDICTED: LOW QUALITY PROTEIN: homeobox protein OTX1-like E. caballus 99.4 354
XP_003908766.1 PREDICTED: homeobox protein OTX1 P. anubis 99.4 353

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: ovary; stomach; mouth; brain; mammary gland; uncharacterized tissue; eye; lung; mixed; pancreas; embryonic tissue; esophagus; intestine; skin; ascites; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2p13
UniSTS entry: Chr 2 Otx1
UniSTS entry: Otx1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

BC007621.1 Homo sapiens orthodenticle homeobox 1, mRNA (cDNA clone MGC:15736 IMAGE:3355563), complete cds PA
NM_014562.3 Homo sapiens orthodenticle homeobox 1 (OTX1), transcript variant 1, mRNA PA
AK095680.1 Homo sapiens cDNA FLJ38361 fis, clone FEBRA2000532, highly similar to HOMEOBOX PROTEIN OTX1 P
AK297308.1 Homo sapiens cDNA FLJ51244 complete cds, highly similar to Homeobox protein OTX1 P
NM_001199770.1 Homo sapiens orthodenticle homeobox 1 (OTX1), transcript variant 2, mRNA PA

EST sequences (10 of 38) [Show all sequences]

BX115302.1 Clone IMAGp998I165537_;_IMAGE:2238039 uncharacterized tissue A
AI280174.1 Clone IMAGE:1872843 intestine 3' read P
AI632122.1 Clone IMAGE:2238039 uncharacterized tissue 3' read A
CB243593.1 Clone UI-CF-FN0-agf-i-24-0-UI lung 3' read A
AI813505.1 Clone IMAGE:2407638 lung 3' read P
AI971638.1 Clone IMAGE:2480764 uncharacterized tissue 3' read P
CD723882.1 Clone oj27f02 eye 5' read
AW136237.1 Clone IMAGE:2715319 mixed 3' read P
AW238176.1 Clone IMAGE:2740817 mouth 3' read
AW806962.1 stomach


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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