> Sodium channel modifier 1 (SCNM1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:5795877     UniGene Hs.732060     Homo sapiens (human)   SCNM1 Order cDNA clone, Links
Sodium channel modifier 1 (SCNM1)

Human protein-coding gene SCNM1. Represented by 199 ESTs from 126 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 5795877 - Hs.732060]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_513787.3 PREDICTED: sodium channel modifier 1 isoform 4 P. troglodytes 100.0 229
NP_076946.1 SCNM1 gene product H. sapiens 100.0 229
NP_081289.2 sodium channel modifier 1 isoform 1 M. musculus 91.9 185
NP_001089700.1 sodium channel modifier 1 X. laevis 54.0 259
Other hits (2 of 16) [Show all]SpeciesId(%)Len(aa)
XP_001105184.1 PREDICTED: sodium channel modifier 1-like isoform 3 M. mulatta 99.1 229
NP_001162417.1 SCNM1 gene product P. anubis 99.1 229

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; mouth; liver; eye; bone; mammary gland; embryonic tissue; mixed; skin; placenta; pharynx; kidney; uncharacterized tissue; intestine; ovary; bone marrow; testis; uterus; blood; muscle; esophagus; ascites; stomach; lymph node; pancreas; heart; connective tissue; amniotic fluid; cervix; prostate; adrenal gland; adipose tissue
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q21.3
UniSTS entry: Chr 1 WIAF-1603 [Map Viewer]
UniSTS entry: Chr 1 D11S2921
UniSTS entry: Chr 1 D11S3114
UniSTS entry: Chr 1 D10S16
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (7)

BC000264.1 Homo sapiens sodium channel modifier 1, mRNA (cDNA clone MGC:3180 IMAGE:3356277), complete cds PA
NM_024041.3 Homo sapiens sodium channel modifier 1 (SCNM1), transcript variant 1, mRNA PA
AK056322.1 Homo sapiens cDNA FLJ31760 fis, clone NT2RI2007729 P
AK301644.1 Homo sapiens cDNA FLJ56585 complete cds, highly similar to Homo sapiens sodium channel modifier 1 (SCNM1), transcript variant 1, mRNA PA
NM_001204856.1 Homo sapiens sodium channel modifier 1 (SCNM1), transcript variant 2, mRNA PA
NM_001204848.1 Homo sapiens TNFAIP8L2-SCNM1 readthrough (TNFAIP8L2-SCNM1), mRNA PA
NR_037937.1 Homo sapiens sodium channel modifier 1 (SCNM1), transcript variant 2, non-coding RNA PA

EST sequences (10 of 199) [Show all sequences]

AA995382.1 Clone IMAGE:1601577 lung 3' read A
AI082307.1 Clone IMAGE:1661847 mixed 3' read PA
AI090123.1 Clone IMAGE:1697576 uterus 3' read PA
BX117355.1 Clone IMAGp998D084030_;_IMAGE:1589719 kidney
CB121378.1 Clone L3SNU475s1-21-F10 liver 5' read P
CB136342.1 Clone L5HLK1-30-D05 liver 5' read P
CB126399.1 Clone L5HLK1s1-17-F04 liver 5' read
CB154454.1 Clone B2N807043-27-A04 brain 5' read P
AI289269.1 Clone IMAGE:1899419 kidney 3' read PA
AI298607.1 Clone IMAGE:1896071 lung 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help