> Single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:5795476     UniGene Hs.731659     Homo sapiens (human)   SMUG1 Order cDNA clone, Links
Single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1)

Human protein-coding gene SMUG1. Represented by 128 ESTs from 90 cDNA libraries. Corresponds to 7 reference sequences (different isoforms). [UniGene 5795476 - Hs.731659]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001135622.1 PREDICTED: single-strand selective monofunctional uracil DNA glycosylase isoform 10 P. troglodytes 100.0 269
NP_001230716.1 SMUG1 gene product H. sapiens 100.0 269
NP_082161.2 single-strand selective monofunctional uracil DNA glycosylase M. musculus 93.3 268
NP_001083825.1 single-strand selective monofunctional uracil DNA glycosylase X. laevis 69.5 243
XP_699524.5 PREDICTED: single-strand selective monofunctional uracil DNA glycosylase, partial D. rerio 67.1 242
NP_650609.1 CG5285 D. melanogaster 49.7 181
Other hits (2 of 32) [Show all]SpeciesId(%)Len(aa)
XP_001109204.1 PREDICTED: single-strand selective monofunctional uracil DNA glycosylase-like isoform 6 M. mulatta 98.5 269
XP_003906529.1 PREDICTED: single-strand selective monofunctional uracil DNA glycosylase isoform 1 P. anubis 98.5 269

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; placenta; ovary; testis; cervix; eye; skin; kidney; embryonic tissue; uncharacterized tissue; uterus; spleen; mouth; lymph node; mammary gland; prostate; mixed; muscle; lung; liver; intestine; adipose tissue; pineal gland; pancreas; bone
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 12
Map position: 12q13.11-q13.3
UniSTS entry: Chr 12 D12S1194E
UniSTS entry: Chr 12 RH11305
UniSTS entry: Chr 12 G59835
UniSTS entry: Chr 12 D12S2015 [Map Viewer]
UniSTS entry: Chr 1 D7S3207
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

AF125182.1 Homo sapiens single-strand selective monofunctional uracil DNA glycosylase mRNA, complete cds PA
AK001235.1 Homo sapiens cDNA FLJ10373 fis, clone NT2RM2001935 P
AK001789.1 Homo sapiens cDNA FLJ10927 fis, clone OVARC1000466 P
NM_014311.2 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 1, mRNA PA
BC088352.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1, mRNA (cDNA clone MGC:110989 IMAGE:6470294), complete cds PA
AK222473.1 Homo sapiens mRNA for single-strand selective monofunctional uracil DNA glycosylase variant, clone: adKA01737 P
BC000417.2 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1, mRNA (cDNA clone MGC:8633 IMAGE:2961516), complete cds PA
BC105607.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1, mRNA (cDNA clone MGC:104370 IMAGE:6724466), complete cds PA
AK290274.1 Homo sapiens cDNA FLJ77802 complete cds, highly similar to Homo sapiens single-strand selective monofunctional uracil DNA glycosylase (SMUG1), mRNA P
NM_001243791.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 6, mRNA PA
NM_001243788.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 3, mRNA PA
NM_001243790.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 5, mRNA PA
NM_001243787.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 2, mRNA PA
NM_001243789.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 4, mRNA PA
NR_045039.1 Homo sapiens single-strand-selective monofunctional uracil-DNA glycosylase 1 (SMUG1), transcript variant 7, non-coding RNA PA

EST sequences (10 of 128) [Show all sequences]

AI074944.1 Clone IMAGE:1667124 skin 3' read A
AI078315.1 Clone IMAGE:1675106 mixed 3' read PA
CB164306.1 Clone L17N670205n1-39-B07 liver 5' read P
CB163825.1 Clone L17N670205n1-28-B09 liver 5' read P
CB142314.1 Clone L11SNU354s1-21-H03 liver 5' read P
CB140556.1 Clone L15CKK1-16-B07 liver 5' read P
AI333829.1 Clone IMAGE:1930624 lung 3' read PA
R51146.1 Clone IMAGE:38860 brain 5' read P
CB991546.1 Clone IMAGE:30331439 placenta 5' read P
CB992610.1 Clone IMAGE:30339667 placenta 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help