> Transcription factor binding to IGHM enhancer 3 (TFE3)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:5071635     UniGene Hs.730740     Homo sapiens (human)   TFE3 Order cDNA clone, Links
Transcription factor binding to IGHM enhancer 3 (TFE3)

Human protein-coding gene TFE3. Represented by 277 ESTs from 165 cDNA libraries. Corresponds to reference sequence NM_006521.4. [UniGene 5071635 - Hs.730740]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_006512.2 TFE3 gene product H. sapiens 100.0 574
XP_001105073.1 PREDICTED: transcription factor E3-like isoform 3 M. mulatta 99.8 574
NP_766060.2 transcription factor E3 isoform a M. musculus 97.5 571
NP_001088215.1 transcription factor binding to IGHM enhancer 3 X. laevis 72.4 427
NP_571923.2 tfe3a gene product D. rerio 68.7 531
Other hits (2 of 27) [Show all]SpeciesId(%)Len(aa)
XP_001494946.1 PREDICTED: transcription factor E3-like isoform 1 E. caballus 99.0 574
XP_003135122.1 PREDICTED: transcription factor E3-like isoform 1 S. scrofa 98.4 574

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; skin; embryonic tissue; placenta; uterus; mixed; thyroid; connective tissue; bone marrow; heart; spleen; prostate; trachea; blood; thymus; cervix; eye; kidney; larynx; ascites; testis; pancreas; intestine; adrenal gland; muscle; uncharacterized tissue; lymph; vascular; mammary gland; stomach; ovary; liver; nerve; ganglia; bone; mouth; adipose tissue; lymph node
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: X
Map position: Xp11.22
UniSTS entry: Chr X DXS9784
UniSTS entry: Chr X SHGC-32925 [Map Viewer]
UniSTS entry: Chr X PMC26398P1
UniSTS entry: Tcfe3
UniSTS entry: DXS9891E
UniSTS entry: Chr 1 L17705
UniSTS entry: Chr 1 RH80031
UniSTS entry: Chr 1 L17971
UniSTS entry: Chr 1 D8S2279
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

NM_006521.4 Homo sapiens transcription factor binding to IGHM enhancer 3 (TFE3), mRNA PA
AK055522.1 Homo sapiens cDNA FLJ30960 fis, clone HCASM2000534 A
AK313540.1 Homo sapiens cDNA, FLJ94100, highly similar to Homo sapiens transcription factor binding to IGHM enhancer 3 (TFE3), mRNA P
AK310095.1 Homo sapiens cDNA, FLJ17137 P
BC026027.1 Homo sapiens transcription factor binding to IGHM enhancer 3, mRNA (cDNA clone MGC:39177 IMAGE:4576858), complete cds PA
AK295497.1 Homo sapiens cDNA FLJ59531 complete cds, highly similar to Transcription factor E3 P
AY034077.1 Homo sapiens ASPL/TFE3 type 1 fusion protein mRNA, partial cds
X51330.1 Human mRNA for transcription factor TFE3 (partial) P
X96717.1 H.sapiens mRNA for transcription factor TFE3 P

EST sequences (10 of 277) [Show all sequences]

BX098888.1 Clone IMAGp998E221822_;_IMAGE:741885 ovary
R30674.1 Clone CBS-84 eye 5' read
R50279.1 Clone IMAGE:152967 mammary gland 5' read P
AI521287.1 Clone IMAGE:2129489 uncharacterized tissue 3' read
AI609650.1 Clone IMAGE:2260213 brain 3' read
AI696979.1 Clone IMAGE:2324570 pancreas 3' read
AI701461.1 Clone IMAGE:2343082 lung 3' read A
CB240745.1 Clone UI-CF-FN0-afw-g-10-0-UI lung 3' read A
AL040493.1 Clone DKFZp434F0414 testis 5' read
AI927484.1 Clone IMAGE:2462615 kidney 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help