> Nuclear receptor subfamily 1, group I, member 2 (NR1I2)
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UGID:132093     UniGene Hs.7303     Homo sapiens (human)   NR1I2 Order cDNA clone, Links
Nuclear receptor subfamily 1, group I, member 2 (NR1I2)

Human protein-coding gene NR1I2. Represented by 32 ESTs from 22 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 132093 - Hs.7303]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_071285.1 NR1I2 gene product H. sapiens 100.0 472
NP_035066.1 Nr1i2 gene product M. musculus 81.1 429
NP_001083606.1 nuclear receptor subfamily 1, group I, member 2 X. laevis 57.6 370
NP_001092087.1 nr1i2 gene product D. rerio 56.9 401
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_001164074.1 PREDICTED: nuclear receptor subfamily 1 group I member 2 isoform 3 P. troglodytes 98.9 472
NP_001028054.3 NR1I2 gene product M. mulatta 96.3 433

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: liver; mixed; embryonic tissue; mammary gland; stomach; uncharacterized tissue; intestine; bone marrow; testis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3q12-q13.3
UniSTS entry: Chr 3 SHGC-56597
UniSTS entry: Chr 3 NR1I3_2131
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF061056.1 Homo sapiens orphan nuclear receptor PXR mRNA, complete cds P
AF084644.1 Homo sapiens orphan nuclear receptor (PAR2) mRNA, complete cds PA
AF084645.1 Homo sapiens orphan nuclear receptor (PAR1) mRNA, complete cds PA
AK122990.1 Homo sapiens cDNA FLJ16751 fis, clone BEAST2001444, highly similar to Orphan nuclear receptor PXR P
AK223456.1 Homo sapiens mRNA, Splice isoform 1C of O75469 variant, clone: FCC115A09 PA
NM_003889.3 Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2), transcript variant 1, mRNA PA
NM_022002.2 Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2), transcript variant 2, mRNA PA
NM_033013.2 Homo sapiens nuclear receptor subfamily 1, group I, member 2 (NR1I2), transcript variant 3, mRNA P
BC017304.2 Homo sapiens nuclear receptor subfamily 1, group I, member 2, mRNA (cDNA clone MGC:29598 IMAGE:5087401), complete cds PA
AK310789.1 Homo sapiens cDNA, FLJ17831 P
AY091855.1 Homo sapiens steroid and xenobiotic sensing nuclear receptor SXR (NR1I2) mRNA, complete cds P
AJ009937.1 Homo sapiens mRNA for nuclear hormone receptor PRR2 PA
AJ009936.1 Homo sapiens mRNA for nuclear hormone receptor PRR1 PA
AB307701.1 Homo sapiens NR1I2 mRNA for orphan nuclear receptor PXR, complete cds P
HQ709177.1 Homo sapiens pregnane X nuclear receptor (NR1I2) mRNA, complete cds P
HQ692837.1 Homo sapiens pregnane X nuclear receptor variant 2 (NR1i2) mRNA, complete cds P

EST sequences (10 of 32) [Show all sequences]

AI024672.1 Clone IMAGE:1641751 testis 3' read A
BX089366.1 Clone IMAGp998P11654_;_IMAGE:293626 mixed
CB129483.1 Clone L11SNU354-11-C02 liver 5' read P
CB145174.1 Clone L11SNU354s1-10-D03 liver 5' read
AI248626.1 Clone IMAGE:1850687 mixed 3' read P
AW511148.1 Clone IMAGE:2910224 mixed 3' read A
CV029125.1 mixed 5' read P
AV651714.1 Clone GLCCSG03 liver 3' read
CX751923.1 Clone IMAGE:7769485 embryonic tissue 3' read P
DR004017.1 Clone TC109996 liver 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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