> Upstream binding protein 1 (LBP-1a) (UBP1)
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UGID:4540721     UniGene Hs.729120     Homo sapiens (human)   UBP1 Order cDNA clone, Links
Upstream binding protein 1 (LBP-1a) (UBP1)

Human protein-coding gene UBP1. Represented by 301 ESTs from 176 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 4540721 - Hs.729120]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_055332.3 UBP1 gene product H. sapiens 100.0 539
XP_001099731.1 PREDICTED: upstream-binding protein 1-like isoform 2 M. mulatta 99.8 539
XP_003895283.1 PREDICTED: upstream-binding protein 1 isoform 2 P. anubis 99.8 539
XP_001168549.2 PREDICTED: upstream-binding protein 1 isoform 3 P. troglodytes 99.8 539
NP_001076788.1 upstream-binding protein 1 isoform a M. musculus 97.2 539
NP_001089447.1 transcription factor CP2 X. laevis 81.6 505
NP_001108046.1 ubp1 gene product D. rerio 81.4 516
NP_724893.2 gemini, isoform D D. melanogaster 50.0 158
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
XP_849167.1 PREDICTED: upstream-binding protein 1 isoform 2 C. lupus familiaris 97.6 538
XP_238562.5 PREDICTED: upstream binding protein 1 isoform 2 R. norvegicus 97.2 539

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; embryonic tissue; heart; thyroid; vascular; pituitary gland; testis; umbilical cord; salivary gland; lung; stomach; mixed; kidney; uncharacterized tissue; spleen; placenta; muscle; esophagus; thymus; ovary; mouth; uterus; bone marrow; mammary gland; amniotic fluid; skin; intestine; blood; eye; lymph node; adrenal gland; liver; pancreas; prostate; connective tissue; cervix; ear; bone; lymph; ascites; nerve; trachea; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 3
Map position: 3p22.3
UniSTS entry: Chr 3 SHGC-76821 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (15)

BC047235.1 Homo sapiens upstream binding protein 1 (LBP-1a), mRNA (cDNA clone MGC:57378 IMAGE:5262788), complete cds PA
AK125415.1 Homo sapiens cDNA FLJ43426 fis, clone OCBBF2027354
AL133032.1 Homo sapiens mRNA; cDNA DKFZp586B0317 (from clone DKFZp586B0317) A
NM_014517.4 Homo sapiens upstream binding protein 1 (LBP-1a) (UBP1), transcript variant 1, mRNA PA
CR749798.1 Homo sapiens mRNA; cDNA DKFZp686L1745 (from clone DKFZp686L1745) PA
AF198487.1 Homo sapiens transcription factor LBP-1b (LBP-1) mRNA, complete cds P
AK023274.1 Homo sapiens cDNA FLJ13212 fis, clone NT2RP4001029, highly similar to Homo sapiens transcription factor LBP-1b (LBP-1) mRNA P
AK023278.1 Homo sapiens cDNA FLJ13216 fis, clone NT2RP4001529, highly similar to Upstream-binding protein 1 P
AK023322.1 Homo sapiens cDNA FLJ13260 fis, clone OVARC1000883
AK027177.1 Homo sapiens cDNA: FLJ23524 fis, clone LNG05566 A
AK293100.1 Homo sapiens cDNA FLJ75097 complete cds, highly similar to Homo sapiens upstream binding protein 1 (LBP-1a) (UBP1), mRNA P
AK309430.1 Homo sapiens cDNA, FLJ99471 P
NM_001128161.1 Homo sapiens upstream binding protein 1 (LBP-1a) (UBP1), transcript variant 3, mRNA PA
NM_001128160.1 Homo sapiens upstream binding protein 1 (LBP-1a) (UBP1), transcript variant 2, mRNA PA
AL831847.1 Homo sapiens mRNA; cDNA DKFZp586B0317 (from clone DKFZp586B0317) A

EST sequences (10 of 301) [Show all sequences]

AA976689.1 Clone IMAGE:1585513 lung 3' read
AA988064.1 Clone IMAGE:1605187 lung 3' read
AI000896.1 Clone IMAGE:1610344 mammary gland 3' read A
AI082293.1 Clone IMAGE:1661840 mixed 3' read A
AI095020.1 Clone IMAGE:1687131 brain 3' read A
BX097683.1 Clone IMAGp998M15400_;_IMAGE:206390 mixed
AI263562.1 Clone IMAGE:1857065 mixed 3' read A
CB152416.1 Clone C1SNU17-39-A12 cervix 5' read A
CB145391.1 Clone L11SNU354s1-4-F11 liver 5' read
CB131781.1 Clone L13SNU387-10-C01 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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